Have you set OPAL_PREFIX to /home/sunitap/soft/openmpi?
Dear Open-mpi users,
I installed openmpi-1.4.1 in my user area and then set the path for
openmpi in the .bashrc file as follow. However, am still getting following
error message whenever am starting the parallel molecular dynamics
simulation using GROMACS. So every time am starting the MD job, I need to
source the .bashrc file again.
Earlier in some other machine I did the same thing and was not getting any
Could you guys suggest what would be the problem?
If you do a ldd on mdrun_mpi does libmpi.so.0 come up not found?
If so and there truly is a libmpi.so.0 in /home/sunitap/soft/openmpi/lib
you may want to make sure the bitness of libmpi.so.0 and mdrun_mpi are
the same by
doing a file command on both.
#path for openmpi
============== error message ==============
mdrun_mpi: error while loading shared libraries: libmpi.so.0: cannot open
shared object file: No such file or directory
Thanks for any help.
users mailing list
Terry D. Dontje | Principal Software Engineer
Engineering | +1.650.633.7054
95 Network Drive, Burlington, MA 01803