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Subject: [OMPI users] Issue with PBS Pro
From: Kiril Dichev (dichev_at_[hidden])
Date: 2009-01-29 10:32:02


I am trying to run with Open MPI 1.3 on a cluster using PBS Pro:

pbs_version = PBSPro_9.2.0.81361

However, after compiling with these options:

--prefix=/home_nfs/parma/x86_64/UNITE/packages/openmpi/1.3-intel10.1-64bit-dynamic-threads CC=/opt/intel/cce/10.1.015/bin/icc CXX=/opt/intel/cce/10.1.015/bin/icpc CPP="/opt/intel/cce/10.1.015/bin/icc -E" FC=/opt/intel/fce/10.1.015/bin/ifort F90=/opt/intel/fce/10.1.015/bin/ifort F77=/opt/intel/fce/10.1.015/bin/ifort --enable-mpi-f90 --with-tm=/usr/pbs/ --enable-mpi-threads=yes --enable-contrib-no-build=vt

I get runtime errors when running on more than one reserved node
even /bin/hostname:

/home_nfs/parma/x86_64/UNITE/packages/openmpi/1.3-intel10.1-64bit-dynamic-threads/bin/mpirun -np 5 /bin/hostname
/home_nfs/parma/x86_64/UNITE/packages/openmpi/1.3-intel10.1-64bit-dynamic-threads/bin/mpirun: symbol lookup error: /home_nfs/parma/x86_64/UNITE/packages/openmpi/1.3-intel10.1-64bit-dynamic-threads/lib/openmpi/ undefined symbol: tm_init

When running on one node only, I don't get this error.

Now, I see that I only have static PBS libraries so I tried to compile
this component statically. I added to the above configure:

However, nothing changed. The same errors occurr.

But if I compile Open MPI only with static libraries ("--enable-static
--disable-shared"), the MPI (or non-MPI) programs run OK.

Can you help me here ?


Dipl.-Inf. Kiril Dichev
Tel.: +49 711 685 60492
E-mail: dichev_at_[hidden]
High Performance Computing Center Stuttgart (HLRS)
Universität Stuttgart
70550 Stuttgart