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Subject: Re: [OMPI users] Valgrind Functionality
From: Tom Riddle (rarebitusa_at_[hidden])
Date: 2008-07-13 09:11:50

Does anyone know if this feature has been incorporated yet? I did a
./configure --help but do not see the enable-ptmalloc2-internal option.

- The ptmalloc2 memory manager component is now by default built as
  a standalone library named libopenmpi-malloc. Users wanting to
  use leave_pinned with ptmalloc2 will now need to link the library
  into their application explicitly. All other users will use the
  libc-provided allocator instead of Open MPI's ptmalloc2. This change
  may be overriden with the configure option enable-ptmalloc2-internal
  --> Expected: 1.3

--- On Fri, 7/11/08, Ashley Pittman <apittman_at_[hidden]> wrote:
From: Ashley Pittman <apittman_at_[hidden]>
Subject: Re: [OMPI users] Valgrind Functionality
To: "Tom Riddle" <rarebitusa_at_[hidden]>
Cc: "Open MPI Users" <users_at_[hidden]>
Date: Friday, July 11, 2008, 8:58 AM

On Tue, 2008-07-08 at 18:01 -0700, Tom Riddle wrote:
> Thanks Ashley, after going through your suggestions we tried our test
> with valgrind 3.3.0 and with glibc-devel-2.5-18.el5_1.1, both exhibit
> the same results. A simple non-MPI test prog however returns expected
> responses, so valgrind itself look ok. We then checked that the same
> (shared) libc gets linked in both the MPI and non-MPI cases, adding
> -pthread to the cc command line yields the same result, the only
> difference it appears is the open mpi libraries.
> Now mpicc links against libopen-pal which defines malloc for it's own
> purposes. The big difference seems to be that is
> providing its own malloc replacement

This will be the problem, I've tested on a openmpi (1.2.6) machine here
and I see exactly the same behaviour as you. I re-compiled the
application without libopen-pal and valgrind works as expected. To do
this I used mpicc -show to see what compile line it was using and ran
the command myself without the -lopen-pal option. This clearly isn't a
acceptable long-term solution but might help you in the short term.

I'm a MPI expert but work on a different MPI to openmpi normally, I have
however done a lot of work with Valgrind on different platforms so pick
up questions related to it here. I think this problem is going to need
input from one of the openmpi guys...

The problem seems to be the presence of malloc() and free() functions in
the libopen-pal library is preventing valgrind from intercepting these
functions in glibc and hence dramatically reducing the benefit which
valgrind brings.

Ashley Pittman.