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Subject: Re: [OMPI devel] r27078 and OMPI build
From: Ralph Castain (rhc_at_[hidden])
Date: 2012-08-24 19:40:37

Oracle uses an abysmally complicated configure line, but nearly all of it is irrelevant to the problem here. For this, I would suggest just doing a vanilla ./configure - if the component gets pulled into libmpi, then we know there is a problem.


Just FYI: here is there actual configure line, just in case you spot something problematic:

CC=cc CXX=CC F77=f77 FC=f90 --with-openib --enable-openib-connectx-xrc --without-udapl
--disable-openib-ibcm --enable-btl-openib-failover --without-dtrace --enable-heterogeneous
--enable-cxx-exceptions --enable-shared --enable-orterun-prefix-by-default --with-sge
--enable-mpi-f90 --with-mpi-f90-size=small --disable-peruse --disable-state
--disable-mpi-thread-multiple --disable-debug --disable-mem-debug --disable-mem-profile
CFLAGS="-xtarget=ultra3 -m32 -xarch=sparcvis2 -xprefetch -xprefetch_level=2 -xvector=lib -Qoption
cg -xregs=no%appl -xdepend=yes -xbuiltin=%all -xO5" CXXFLAGS="-xtarget=ultra3 -m32
-xarch=sparcvis2 -xprefetch -xprefetch_level=2 -xvector=lib -Qoption cg -xregs=no%appl -xdepend=yes
-xbuiltin=%all -xO5 -Bstatic -lCrun -lCstd -Bdynamic" FFLAGS="-xtarget=ultra3 -m32 -xarch=sparcvis2
-xprefetch -xprefetch_level=2 -xvector=lib -Qoption cg -xregs=no%appl -stackvar -xO5"
FCFLAGS="-xtarget=ultra3 -m32 -xarch=sparcvis2 -xprefetch -xprefetch_level=2 -xvector=lib -Qoption
cg -xregs=no%appl -stackvar -xO5"
--mandir=${prefix}/man --bindir=${prefix}/bin --libdir=${prefix}/lib
--includedir=${prefix}/include --with-tm=/ws/ompi-tools/orte/torque/current/shared-install32
--enable-contrib-no-build=vt --with-package-string="Oracle Message Passing Toolkit "
--with-ident-string="@(#)RELEASE VERSION 1.9openmpi-1.5.4-r1.9a1r27092"

and the error he gets is:

make[2]: Entering directory
  CCLD ompi_info
Undefined first referenced
 symbol in file
mca_coll_ml_memsync_intra ../../../ompi/.libs/
ld: fatal: symbol referencing errors. No output written to .libs/ompi_info
make[2]: *** [ompi_info] Error 2
make[2]: Leaving directory
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory
make: *** [install-recursive] Error 1

On Aug 24, 2012, at 4:30 PM, Paul Hargrove <phhargrove_at_[hidden]> wrote:

> I have access to a few different Solaris machines and can offer to build the trunk if somebody tells me what configure flags are desired.
> -Paul
> On Fri, Aug 24, 2012 at 8:54 AM, Ralph Castain <rhc_at_[hidden]> wrote:
> Eugene - can you confirm that this is only happening on the one Solaris system? In other words, is this a general issue or something specific to that one machine?
> I'm wondering because if it is just the one machine, then it might be something strange about how it is setup - perhaps the version of Solaris, or it is configuring --enable-static, or...
> Just trying to assess how general a problem this might be, and thus if this should be a blocker or not.
> On Aug 24, 2012, at 8:00 AM, Eugene Loh <eugene.loh_at_[hidden]> wrote:
> > On 08/24/12 09:54, Shamis, Pavel wrote:
> >> Maybe there is a chance to get direct access to this system ?
> > No.
> >
> > But I'm attaching compressed log files from configure/make.
> >
> > <tarball-of-log-files.tar.bz2>_______________________________________________
> > devel mailing list
> > devel_at_[hidden]
> >
> _______________________________________________
> devel mailing list
> devel_at_[hidden]
> --
> Paul H. Hargrove PHHargrove_at_[hidden]
> Future Technologies Group
> Computer and Data Sciences Department Tel: +1-510-495-2352
> Lawrence Berkeley National Laboratory Fax: +1-510-486-6900
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