Hello,

I am trying to set up clustalw-mpi on a local cluster. But I am having several problems that a search through the FAQ and mailing list were not able to solve.

I have installed open-mpi in the front end of the cluster, my doubt is if I also to install mpi in all the nodes I will use.

Currently the mpi is working in the front end, but when I try to use a different node using: mpirun –np 1 –host root@192.168.0.1,  I get the following error:

[biocluster.biocant.pt:07881] [0,0,0] ORTE_ERROR_LOG: Data unpack had inadequate space in file dss/dss_unpack.c at line 90

[biocluster.biocant.pt:07881] [0,0,0] ORTE_ERROR_LOG: Data unpack had inadequate space in file gpr_replica_cmd_processor.c at line 361

[biocluster.biocant.pt:07881] [0,0,0] ORTE_ERROR_LOG: Data unpack had inadequate space in file dss/dss_unpack.c at line 90

[biocluster.biocant.pt:07881] [0,0,0] ORTE_ERROR_LOG: Data unpack had inadequate space in file gpr_replica_cmd_processor.c at line 361

[biocluster.biocant.pt:07881] [0,0,0] ORTE_ERROR_LOG: Data unpack had inadequate space in file dss/dss_unpack.c at line 90

[biocluster.biocant.pt:07881] [0,0,0] ORTE_ERROR_LOG: Data unpack had inadequate space in file gpr_replica_cmd_processor.c at line 361

 

Thanks in advance,

Bruno Santos

 

 

logo_biocant

 

Bioinformatics Unit

Biocantpark,  Núcleo 04, Lote 3  

3060-197 Cantanhede  

Tel: 231 410 892 E-mail: bsantos@biocant.pt

http://bioinformatics.biocant.pt