If you list the /usr/local/openmpi1.6.5/lib directory, do you see the referenced libraries?


On Jul 24, 2013, at 5:09 PM, Yuping Sun <ysun@fdwt.com> wrote:

Dear All:
 
I downloaded openmpi1.5.6 and installed on my linux workstation with the help of NASA engineer. Then I tried to test the openmpi installation, but get the following error message:
 
[ysun@ysunrh mpi]$ which mpiexec
/usr/local/openmpi1.6.5/bin/mpiexec
[ysun@ysunrh mpi]$ mpiexec utils/MPIcheck/mpicheck
[ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_paffinity_hwloc: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_carto_auto_detect: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_carto_file: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_shmem_mmap: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_shmem_posix: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_shmem_sysv: lt_dlerror() returned NULL! (ignored)
--------------------------------------------------------------------------
It looks like opal_init failed for some reason; your parallel process is
likely to abort.  There are many reasons that a parallel process can
fail during opal_init; some of which are due to configuration or
environment problems.  This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
 
  opal_shmem_base_select failed
  --> Returned value -1 instead of OPAL_SUCCESS
--------------------------------------------------------------------------
[ysunrh.fdwt.com:24905] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79
[ysunrh.fdwt.com:24905] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694
 
 
I also try the use ompi_info to get more information, and it give me a lot error messages and I listed some below:
 
[ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_osc_pt2pt: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_osc_rdma: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_btl_self: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_btl_sm: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_btl_tcp: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_topo_unity: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_pubsub_orte: lt_dlerror() returned NULL! (ignored)
[ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_dpm_orte: lt_dlerror() returned NULL! (ignored)
           MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.6.5)
              MCA memory: linux (MCA v2.0, API v2.0, Component v1.6.5)
               MCA timer: linux (MCA v2.0, API v2.0, Component v1.6.5)
         MCA installdirs: env (MCA v2.0, API v2.0, Component v1.6.5)
         MCA installdirs: config (MCA v2.0, API v2.0, Component v1.6.5)
               MCA hwloc: hwloc132 (MCA v2.0, API v2.0, Component v1.6.5)
 
 
Could anyone of you give me some help, and tell me what I need to do to install openmpi correctly or give me some instructions to make it working? Thank you.
 
 
Yuping Sun

FloDesign Wind Turbine Corp
242 Sturbridge Road
Charlton, MA  01507
Direct: 508-434-1507
Cell: 713-456-9420 
ysun@fdwt.com
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