2012/12/12 <users-request@open-mpi.org>

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Today's Topics:

1. Re: Live process migration (Ifeanyi)
2. Re: Live process migration (Ifeanyi)
3. Re: Live process migration (Ifeanyi)
4. openmpi-1.7rc5 cannot install when build with ./configure
--with-ft=cr (Ifeanyi)
5. Re: OpenMPI-1.6.3 MinGW64 buildup on Windows 7 (Ilias Miroslav)
6. Re: OpenMPI-1.6.3 MinGW64 buildup on Windows 7 (Ilias Miroslav)
7. Serveral issue in mpirun on macosx 10.8.2 (Extreme Programming)
8. Re: OpenMPI-1.6.3 MinGW64 buildup on Windows 7 (Damien Hocking)
9. Re: Serveral issue in mpirun on macosx 10.8.2 (Ralph Castain)
10. Re: openmpi-1.7rc5 cannot install when build with ./configure
--with-ft=cr (Ralph Castain)
11. problem configuring openmpi-1.6.4a1r27643 on Linux (Siegmar Gross)

----------------------------------------------------------------------

Message: 1
Date: Wed, 12 Dec 2012 09:58:45 +1100
From: Ifeanyi <ifeanyeg2012@gmail.com>
Subject: Re: [OMPI users] Live process migration
To: Open MPI Users <users@open-mpi.org>
Message-ID:
<CAMxrTy8+7JtgnZNj30OSSz-btt7SDGpB7ERWKjbnbXpb7Shyjw@mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"

Thanks Josh.

I will give a go.

Regards - Ifeanyi

On Wed, Dec 12, 2012 at 3:19 AM, Josh Hursey <jjhursey@open-mpi.org> wrote:

> Process migration was implemented in Open MPI and working in the trunk a
> couple of years ago. It has not been well maintained for a few years though
> (hopefully that will change one day). So you can try it, but your results
> may vary.
>
> Some details are at the link below:
> http://osl.iu.edu/research/ft/ompi-cr/tools.php#ompi-migrate
>
> On Mon, Dec 10, 2012 at 10:39 PM, Ifeanyi <ifeanyeg2012@gmail.com> wrote:
>
>> Hi all,
>>
>> Just wondering if live process migration of processes is supported in
>> open mpi?
>>
>> or any idea of how to do live migration of processes pls.
>>
>> Regards,
>> Ifeanyi
>>
>> _______________________________________________
>> users mailing list
>> users@open-mpi.org
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>
>
>
> --
> Joshua Hursey
> Assistant Professor of Computer Science
> University of Wisconsin-La Crosse
> http://cs.uwlax.edu/~jjhursey
>
> _______________________________________________
> users mailing list
> users@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
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Message: 2
Date: Wed, 12 Dec 2012 13:04:59 +1100
From: Ifeanyi <ifeanyeg2012@gmail.com>
Subject: Re: [OMPI users] Live process migration
To: Open MPI Users <users@open-mpi.org>
Message-ID:
<CAMxrTy8U0zWYzKjsLhVyUuhpWUsbJVJbQJ3VO8vDmRqBUgb7+w@mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"

Hi Josh,

I can checkpoint but cannot migrate.

when I type ~openmpi-1.6# ompi-migrate ... I got this problem
bash: ompi-migrate: command not found

Please assist.

Regards - Ifeanyi

On Wed, Dec 12, 2012 at 3:19 AM, Josh Hursey <jjhursey@open-mpi.org> wrote:

> Process migration was implemented in Open MPI and working in the trunk a
> couple of years ago. It has not been well maintained for a few years though
> (hopefully that will change one day). So you can try it, but your results
> may vary.
>
> Some details are at the link below:
> http://osl.iu.edu/research/ft/ompi-cr/tools.php#ompi-migrate
>
> On Mon, Dec 10, 2012 at 10:39 PM, Ifeanyi <ifeanyeg2012@gmail.com> wrote:
>
>> Hi all,
>>
>> Just wondering if live process migration of processes is supported in
>> open mpi?
>>
>> or any idea of how to do live migration of processes pls.
>>
>> Regards,
>> Ifeanyi
>>
>> _______________________________________________
>> users mailing list
>> users@open-mpi.org
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>
>
>
> --
> Joshua Hursey
> Assistant Professor of Computer Science
> University of Wisconsin-La Crosse
> http://cs.uwlax.edu/~jjhursey
>
> _______________________________________________
> users mailing list
> users@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
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Message: 3
Date: Wed, 12 Dec 2012 16:58:18 +1100
From: Ifeanyi <ifeanyeg2012@gmail.com>
Subject: Re: [OMPI users] Live process migration
To: Open MPI Users <users@open-mpi.org>
Message-ID:
<CAMxrTy-aR78-LQHEORynnGBQ0DMdL+8CCtzeTwhwDqXvTrm+hQ@mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"

this is what I did after installing dmtcp
on a different terminal # ./dmtcp_coordinator
on another terminal # ./dmtcp_checkpoint mpirun ./icpi

When I ran this command # ./dmtcp_command --checkpoint.
it terminates with this messages

[8147] WARNING at connectionmanager.cpp:263 in fdToDevice;
REASON='JWARNING(false) failed'
Message: PTS Device not found
[8147] ERROR at connectionmanager.cpp:277 in fdToDevice;
REASON='JASSERT(false) failed'
fd = 1
device = /dev/pts/2 (deleted)
Message: PTS Device not found in connection list
icpi (8147): Terminating...

pls what is the way to migrate process with dmtcp?

please assist
Regards - Ifeanyi

On Tue, Dec 11, 2012 at 5:10 PM, Jaroslaw Slawinski <jaross@mathcs.emory.edu
> wrote:

> true, looks like the entire sourceforge is down
> best
> js
>
> On Tue, Dec 11, 2012 at 12:57 AM, Ifeanyi <ifeanyeg2012@gmail.com> wrote:
> > Thanks Jaroslaw,
> >
> > I will try it asap, it appears that DMTCP at sourceforge.net site is
> down at
> > the moment.
> >
> > Regards - ifeanyi
> >
> >
> > On Tue, Dec 11, 2012 at 4:11 PM, Jaroslaw Slawinski
> > <jaross@mathcs.emory.edu> wrote:
> >>
> >> check DMTCP - it worked for me
> >> js
> >>
> >> On Mon, Dec 10, 2012 at 11:39 PM, Ifeanyi <ifeanyeg2012@gmail.com>
> wrote:
> >> > Hi all,
> >> >
> >> > Just wondering if live process migration of processes is supported in
> >> > open
> >> > mpi?
> >> >
> >> > or any idea of how to do live migration of processes pls.
> >> >
> >> > Regards,
> >> > Ifeanyi
> >> >
> >> > _______________________________________________
> >> > users mailing list
> >> > users@open-mpi.org
> >> > http://www.open-mpi.org/mailman/listinfo.cgi/users
> >> _______________________________________________
> >> users mailing list
> >> users@open-mpi.org
> >> http://www.open-mpi.org/mailman/listinfo.cgi/users
> >
> >
> >
> > _______________________________________________
> > users mailing list
> > users@open-mpi.org
> > http://www.open-mpi.org/mailman/listinfo.cgi/users
> _______________________________________________
> users mailing list
> users@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
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Message: 4
Date: Wed, 12 Dec 2012 19:38:25 +1100
From: Ifeanyi <ifeanyeg2012@gmail.com>
Subject: [OMPI users] openmpi-1.7rc5 cannot install when build with
./configure --with-ft=cr
To: Open MPI Users <users@open-mpi.org>
Message-ID:
<CAMxrTy9B8xvD8pzTsxY_GdqgeUsznjTpXH5ufBcMhQ+Yzdxh+A@mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"

Hi all,

I am having trouble building openmpi-1.7rc5 with ../configure --with-ft=cr

openmpi-1.7rc5# ./configure --with-ft=cr
openmpi-1.7rc5# make all install

error message:
base/errmgr_base_fns.c:565:13: warning: ignoring return value of
'asprintf', declared with attribute warn_unused_result [-Wunused-result]
base/errmgr_base_fns.c: In function 'orte_errmgr_base_migrate_state_str':
base/errmgr_base_fns.c:384:17: warning: ignoring return value of
'asprintf', declared with attribute warn_unused_result [-Wunused-result]
base/errmgr_base_fns.c: In function 'orte_errmgr_base_abort':
base/errmgr_base_fns.c:244:18: warning: ignoring return value of
'vasprintf', declared with attribute warn_unused_result [-Wunused-result]
make[2]: *** [base/errmgr_base_fns.lo] Error 1
make[2]: Leaving directory
`/home/abolap/Downloads/openmpi-1.7rc5/orte/mca/errmgr'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/abolap/Downloads/openmpi-1.7rc5/orte'
make: *** [all-recursive] Error 1

It install successfully when fault tolerance is not enabled on the build.

Pls help.

Regards - Ifeanyi
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Message: 5
Date: Wed, 12 Dec 2012 10:54:18 +0100
From: Ilias Miroslav <Miroslav.Ilias@umb.sk>
Subject: Re: [OMPI users] OpenMPI-1.6.3 MinGW64 buildup on Windows 7
To: "users@open-mpi.org" <users@open-mpi.org>
Message-ID:
<C2E47DDD62F84E4CAF40AFFA65C0843C01E20CBA924F@MAILBOX2.umb.sk>
Content-Type: text/plain; charset="us-ascii"

Hi again,

in addition, I met the same compilation error on my 32-bit Windows 7 PC, with 32-bit MinGW compilers:

C:\OpenMPI-1.6.3-MinGW>mingw32-make
-- The Fortran compiler identification is GNU
-- checking for type of MPI_Offset...
-- checking for type of MPI_Offset...long long
-- checking for an MPI datatype for MPI_Offset...
-- checking for an MPI datatype for MPI_Offset...MPI_LONG_LONG
-- Check for working flex...
-- Skipping MPI F77 interface
-- looking for ccp...
-- looking for ccp...not found.
-- looking for ccp...
-- looking for ccp...not found.
-- Configuring done
-- Generating done
-- Build files have been written to: C:/OpenMPI-1.6.3-MinGW
Scanning dependencies of target libopen-pal
[ 1%] Building C object opal/CMakeFiles/libopen-pal.dir/datatype/opal_datatype_
pack_checksum.obj
In file included from C:/Users/milias/Downloads/openmpi-1.6.3/opal/include/opal_
config_bottom.h:258:0,
from C:/OpenMPI-1.6.3-MinGW/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3-MinGW\opal\datatype\opal_datatype_pack_ch
ecksum.c:21:
C:/Users/milias/Downloads/openmpi-1.6.3/opal/win32/win_compat.h:93:14: error: co
nflicting types for 'ssize_t'
In file included from c:\mingw\bin\../lib/gcc/mingw32/4.7.2/../../../../include/
process.h:17:0,
from C:/Users/milias/Downloads/openmpi-1.6.3/opal/win32/win_com
pat.h:70,
from C:/Users/milias/Downloads/openmpi-1.6.3/opal/include/opal_
config_bottom.h:258,
from C:/OpenMPI-1.6.3-MinGW/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3-MinGW\opal\datatype\opal_datatype_pack_ch
ecksum.c:21:
c:\mingw\bin\../lib/gcc/mingw32/4.7.2/../../../../include/sys/types.h:118:18: no
te: previous declaration of 'ssize_t' was here
In file included from C:/OpenMPI-1.6.3-MinGW/opal/include/opal_config.h:1468:0,
from C:\OpenMPI-1.6.3-MinGW\opal\datatype\opal_datatype_pack_ch
ecksum.c:21:
C:/Users/milias/Downloads/openmpi-1.6.3/opal/include/opal_config_bottom.h:559:0:
warning: "PF_UNSPEC" redefined [enabled by default]
In file included from C:/Users/milias/Downloads/openmpi-1.6.3/opal/win32/win_com
pat.h:68:0,
from C:/Users/milias/Downloads/openmpi-1.6.3/opal/include/opal_
config_bottom.h:258,
from C:/OpenMPI-1.6.3-MinGW/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3-MinGW\opal\datatype\opal_datatype_pack_ch
ecksum.c:21:
c:\mingw\bin\../lib/gcc/mingw32/4.7.2/../../../../include/winsock2.h:368:0: note
: this is the location of the previous definition
In file included from C:/OpenMPI-1.6.3-MinGW/opal/include/opal_config.h:1468:0,
from C:\OpenMPI-1.6.3-MinGW\opal\datatype\opal_datatype_pack_ch
ecksum.c:21:
C:/Users/milias/Downloads/openmpi-1.6.3/opal/include/opal_config_bottom.h:562:0:
warning: "AF_INET6" redefined [enabled by default]
In file included from C:/Users/milias/Downloads/openmpi-1.6.3/opal/win32/win_com
pat.h:68:0,
from C:/Users/milias/Downloads/openmpi-1.6.3/opal/include/opal_
config_bottom.h:258,
from C:/OpenMPI-1.6.3-MinGW/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3-MinGW\opal\datatype\opal_datatype_pack_ch
ecksum.c:21:
c:\mingw\bin\../lib/gcc/mingw32/4.7.2/../../../../include/winsock2.h:329:0: note
: this is the location of the previous definition
In file included from C:/OpenMPI-1.6.3-MinGW/opal/include/opal_config.h:1468:0,
from C:\OpenMPI-1.6.3-MinGW\opal\datatype\opal_datatype_pack_ch
ecksum.c:21:
C:/Users/milias/Downloads/openmpi-1.6.3/opal/include/opal_config_bottom.h:565:0:
warning: "PF_INET6" redefined [enabled by default]
In file included from C:/Users/milias/Downloads/openmpi-1.6.3/opal/win32/win_com
pat.h:68:0,
from C:/Users/milias/Downloads/openmpi-1.6.3/opal/include/opal_
config_bottom.h:258,
from C:/OpenMPI-1.6.3-MinGW/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3-MinGW\opal\datatype\opal_datatype_pack_ch
ecksum.c:21:
c:\mingw\bin\../lib/gcc/mingw32/4.7.2/../../../../include/winsock2.h:392:0: note
: this is the location of the previous definition
opal\CMakeFiles\libopen-pal.dir\build.make:57: recipe for target 'opal/CMakeFile
s/libopen-pal.dir/datatype/opal_datatype_pack_checksum.obj' failed
mingw32-make[2]: *** [opal/CMakeFiles/libopen-pal.dir/datatype/opal_datatype_pac
k_checksum.obj] Error 1
CMakeFiles\Makefile2:82: recipe for target 'opal/CMakeFiles/libopen-pal.dir/all'
failed
mingw32-make[1]: *** [opal/CMakeFiles/libopen-pal.dir/all] Error 2
Makefile:135: recipe for target 'all' failed
mingw32-make: *** [all] Error 2

C:\OpenMPI-1.6.3-MinGW>

________________________________________
From: Ilias Miroslav
Sent: Sunday, December 09, 2012 8:52 PM
To: users@open-mpi.org
Subject: OpenMPI-1.6.3 MinGW64 buildup on Windows 7

Dear experts,

following README.WINDOWS.txt I am trying to install OpenMPI-1.6.3 using MinGW64 package on my 64-bit Windows 7 machine.

After configuring with cmake-giu, I got these error messages below. Any help, please ? Maybe I should set up some CMake variable to cure " conflicting types for 'ssize_t'" ?
It seems that you support build only on 32-bit Windows platform....?

Miro

C:\OpenMPI-1.6.3_MinGW64>mingw32-make install
-- The Fortran compiler identification is GNU
-- checking for type of MPI_Offset...
-- checking for type of MPI_Offset...long long
-- checking for an MPI datatype for MPI_Offset...
-- checking for an MPI datatype for MPI_Offset...MPI_LONG_LONG
-- Check for working flex...
-- Skipping MPI F77 interface
-- looking for ccp...
-- looking for ccp...not found.
-- looking for ccp...
-- looking for ccp...not found.
-- Configuring done
-- Generating done
-- Build files have been written to: C:/OpenMPI-1.6.3_MinGW64
Scanning dependencies of target libopen-pal
[ 1%] Building C object opal/CMakeFiles/libopen-pal.dir/datatype/opal_datatype_pack_check
sum.obj
In file included from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/include/o
pal_config_bottom.h:258:0,
from C:/OpenMPI-1.6.3_MinGW64/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3_MinGW64\opal\datatype\opal_datatype_pack_checksum.c
:21:
C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/win32/win_compat.h:93:14: error
: conflicting types for 'ssize_t'
In file included from c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_6
4-w64-mingw32/include/windows.h:9:0,
from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/win32/win
_compat.h:59,
from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/include/o
pal_config_bottom.h:258,
from C:/OpenMPI-1.6.3_MinGW64/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3_MinGW64\opal\datatype\opal_datatype_pack_checksum.c
:21:
c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_64-w64-mingw32/include/
_mingw.h:381:35: note: previous declaration of 'ssize_t' was here
In file included from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/include/o
pal_config_bottom.h:258:0,
from C:/OpenMPI-1.6.3_MinGW64/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3_MinGW64\opal\datatype\opal_datatype_pack_checksum.c
:21:
C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/win32/win_compat.h:175:0: warni
ng: "PATH_MAX" redefined [enabled by default]
In file included from c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/include-fixed/lim
its.h:169:0,
from c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/include-fixed/sys
limits.h:7,
from c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/include-fixed/lim
its.h:34,
from c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_6
4-w64-mingw32/include/stdlib.h:10,
from c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_6
4-w64-mingw32/include/intrin.h:21,
from c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_6
4-w64-mingw32/include/winnt.h:1472,
from c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_6
4-w64-mingw32/include/windef.h:139,
from c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_6
4-w64-mingw32/include/windows.h:69,
from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/win32/win
_compat.h:59,
from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/include/o
pal_config_bottom.h:258,
from C:/OpenMPI-1.6.3_MinGW64/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3_MinGW64\opal\datatype\opal_datatype_pack_checksum.c
:21:
c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_64-w64-mingw32/include/
limits.h:20:0: note: this is the location of the previous definition
In file included from C:/OpenMPI-1.6.3_MinGW64/opal/include/opal_config.h:1468:0,
from C:\OpenMPI-1.6.3_MinGW64\opal\datatype\opal_datatype_pack_checksum.c
:21:
C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/include/opal_config_bottom.h:55
9:0: warning: "PF_UNSPEC" redefined [enabled by default]
In file included from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/win32/win
_compat.h:68:0,
from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/include/o
pal_config_bottom.h:258,
from C:/OpenMPI-1.6.3_MinGW64/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3_MinGW64\opal\datatype\opal_datatype_pack_checksum.c
:21:
c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_64-w64-mingw32/include/
winsock2.h:268:0: note: this is the location of the previous definition
In file included from C:/OpenMPI-1.6.3_MinGW64/opal/include/opal_config.h:1468:0,
from C:\OpenMPI-1.6.3_MinGW64\opal\datatype\opal_datatype_pack_checksum.c
:21:
C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/include/opal_config_bottom.h:56
2:0: warning: "AF_INET6" redefined [enabled by default]
In file included from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/win32/win
_compat.h:68:0,
from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/include/o
pal_config_bottom.h:258,
from C:/OpenMPI-1.6.3_MinGW64/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3_MinGW64\opal\datatype\opal_datatype_pack_checksum.c
:21:
c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_64-w64-mingw32/include/
winsock2.h:243:0: note: this is the location of the previous definition
In file included from C:/OpenMPI-1.6.3_MinGW64/opal/include/opal_config.h:1468:0,
from C:\OpenMPI-1.6.3_MinGW64\opal\datatype\opal_datatype_pack_checksum.c
:21:
C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/include/opal_config_bottom.h:56
5:0: warning: "PF_INET6" redefined [enabled by default]
In file included from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/win32/win
_compat.h:68:0,
from C:/Users/milias/Downloads/openmpi-1.6.3/openmpi-1.6.3/opal/include/o
pal_config_bottom.h:258,
from C:/OpenMPI-1.6.3_MinGW64/opal/include/opal_config.h:1468,
from C:\OpenMPI-1.6.3_MinGW64\opal\datatype\opal_datatype_pack_checksum.c
:21:
c:\mingw64\bin\../lib/gcc/x86_64-w64-mingw32/4.7.1/../../../../x86_64-w64-mingw32/include/
winsock2.h:292:0: note: this is the location of the previous definition
mingw32-make[2]: *** [opal/CMakeFiles/libopen-pal.dir/datatype/opal_datatype_pack_checksum
.obj] Error 1
mingw32-make[1]: *** [opal/CMakeFiles/libopen-pal.dir/all] Error 2
mingw32-make: *** [all] Error 2

C:\OpenMPI-1.6.3_MinGW64>

------------------------------

Message: 6
Date: Wed, 12 Dec 2012 11:31:25 +0100
From: Ilias Miroslav <Miroslav.Ilias@umb.sk>
Subject: Re: [OMPI users] OpenMPI-1.6.3 MinGW64 buildup on Windows 7
To: Ilias Miroslav <Miroslav.Ilias@umb.sk>, "users@open-mpi.org"
<users@open-mpi.org>
Message-ID:
<C2E47DDD62F84E4CAF40AFFA65C0843C01E20CBA9254@MAILBOX2.umb.sk>
Content-Type: text/plain; charset="us-ascii"

Ad: http://www.open-mpi.org/community/lists/users/2012/12/20865.php

Thanks for your efforts, Damien;

however, in between I realized that this standalone Windows OpenMPI is built from ifort.exe + cl.exe, and I have only MinGW suite in disposal...

For that reason I tried to build-up OpenMPI on Windows 7 (both 64 and 32-bits), but failed, see:
http://www.open-mpi.org/community/lists/users/2012/12/20921.php

Best, Miro

------------------------------

Message: 7
Date: Wed, 12 Dec 2012 13:11:30 +0100
From: Extreme Programming <dmasondev@gmail.com>
Subject: [OMPI users] Serveral issue in mpirun on macosx 10.8.2
To: users@open-mpi.org
Message-ID:
<CAJn1Notk9-ZFkCOw78mOK1dJQHELb-6qAqtfos=F50gW60Q1gg@mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"

Hi, I have just installed openmpi 1.7 on my macosx 10.8.2 because i need
java bining.
Installation works fine, compilation too but when i executed the "mpirun -n
4 myfile" i get this error:

MacBook-Pro:Desktop rainmaker$ mpirun -n 4 a.out
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_ess_slurmd:
dlopen(/usr/local/lib/openmpi/mca_ess_slurmd.so, 9): Symbol not found:
_orte_jmap_t_class
Referenced from: /usr/local/lib/openmpi/mca_ess_slurmd.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_ess_slurmd.so (ignored)
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_errmgr_default:
dlopen(/usr/local/lib/openmpi/mca_errmgr_default.so, 9): Symbol not found:
_orte_errmgr_base_error_abort
Referenced from: /usr/local/lib/openmpi/mca_errmgr_default.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_errmgr_default.so (ignored)
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_routed_cm:
dlopen(/usr/local/lib/openmpi/mca_routed_cm.so, 9): Symbol not found:
_orte_message_event_t_class
Referenced from: /usr/local/lib/openmpi/mca_routed_cm.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_routed_cm.so (ignored)
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_routed_linear:
dlopen(/usr/local/lib/openmpi/mca_routed_linear.so, 9): Symbol not found:
_orte_message_event_t_class
Referenced from: /usr/local/lib/openmpi/mca_routed_linear.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_routed_linear.so (ignored)
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_grpcomm_basic:
dlopen(/usr/local/lib/openmpi/mca_grpcomm_basic.so, 9): Symbol not found:
_opal_profile
Referenced from: /usr/local/lib/openmpi/mca_grpcomm_basic.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_grpcomm_basic.so (ignored)
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_grpcomm_hier:
dlopen(/usr/local/lib/openmpi/mca_grpcomm_hier.so, 9): Symbol not found:
_orte_daemon_cmd_processor
Referenced from: /usr/local/lib/openmpi/mca_grpcomm_hier.so
Expected in: flat namespace
in /usr/local/lib/openmpi/mca_grpcomm_hier.so (ignored)
[MacBook-Pro:18481] *** Process received signal ***
[MacBook-Pro:18481] Signal: Segmentation fault: 11 (11)
[MacBook-Pro:18481] Signal code: Address not mapped (1)
[MacBook-Pro:18481] Failing at address: 0x14
[MacBook-Pro:18481] [ 0] 2 libsystem_c.dylib
0x00007fff820308ea _sigtramp + 26
[MacBook-Pro:18481] [ 1] 3 ???
0x00007fff59070458 0x0 + 140734687020120
[MacBook-Pro:18481] [ 2] 4 libopen-rte.5.dylib
0x0000000106bd7658 orte_rmaps_base_map_job + 984
[MacBook-Pro:18481] [ 3] 5 libopen-rte.5.dylib
0x0000000106c1a0a0 opal_libevent2019_event_base_loop + 1888
[MacBook-Pro:18481] [ 4] 6 mpirun
0x0000000106b916e1 orterun + 5137
[MacBook-Pro:18481] [ 5] 7 mpirun
0x0000000106b90290 main + 32
[MacBook-Pro:18481] [ 6] 8 libdyld.dylib
0x00007fff8ac597e1 start + 0
[MacBook-Pro:18481] [ 7] 9 ???
0x0000000000000004 0x0 + 4
[MacBook-Pro:18481] *** End of error message ***
Segmentation fault: 11

for resolving it, i have exported the LD_LIBRARY_PATH = /usr/local/bin and
I used the same configuration of my last openmpi's installation.
Please help me to solve this issue.

Thank you very much.
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------------------------------

Message: 8
Date: Wed, 12 Dec 2012 07:08:26 -0700
From: Damien Hocking <damien@khubla.com>
Subject: Re: [OMPI users] OpenMPI-1.6.3 MinGW64 buildup on Windows 7
To: Open MPI Users <users@open-mpi.org>
Message-ID: <50C88FDA.9050803@khubla.com>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

I know 1.6.3 is broken for Win builds with VS2012 and Intel. I'm not a
MinGW expert by any means, I've hardly ever used it. I'll try and look
at this on the weekend. If you can post on Friday to job my memory that
would help. :-)

Damien

On 12/12/2012 3:31 AM, Ilias Miroslav wrote:
> Ad: http://www.open-mpi.org/community/lists/users/2012/12/20865.php
>
> Thanks for your efforts, Damien;
>
> however, in between I realized that this standalone Windows OpenMPI is built from ifort.exe + cl.exe, and I have only MinGW suite in disposal...
>
> For that reason I tried to build-up OpenMPI on Windows 7 (both 64 and 32-bits), but failed, see:
> http://www.open-mpi.org/community/lists/users/2012/12/20921.php
>
> Best, Miro
> _______________________________________________
> users mailing list
> users@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users

------------------------------

Message: 9
Date: Wed, 12 Dec 2012 06:52:08 -0800
From: Ralph Castain <rhc@open-mpi.org>
Subject: Re: [OMPI users] Serveral issue in mpirun on macosx 10.8.2
To: Open MPI Users <users@open-mpi.org>
Message-ID: <8A9A833E-026F-4AED-B9B2-38658A7E0065@open-mpi.org>
Content-Type: text/plain; charset=iso-8859-1

Well, this

> LD_LIBRARY_PATH = /usr/local/bin

certainly isn't right - it needs to be /usr/local/lib, based on the output below. What prefix did you provide to configure OMPI?

On Dec 12, 2012, at 4:11 AM, Extreme Programming <dmasondev@gmail.com> wrote:

> Hi, I have just installed openmpi 1.7 on my macosx 10.8.2 because i need java bining.
> Installation works fine, compilation too but when i executed the "mpirun -n 4 myfile" i get this error:
>
> MacBook-Pro:Desktop rainmaker$ mpirun -n 4 a.out
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_ess_slurmd: dlopen(/usr/local/lib/openmpi/mca_ess_slurmd.so, 9): Symbol not found: _orte_jmap_t_class
> Referenced from: /usr/local/lib/openmpi/mca_ess_slurmd.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_ess_slurmd.so (ignored)
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_errmgr_default: dlopen(/usr/local/lib/openmpi/mca_errmgr_default.so, 9): Symbol not found: _orte_errmgr_base_error_abort
> Referenced from: /usr/local/lib/openmpi/mca_errmgr_default.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_errmgr_default.so (ignored)
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_routed_cm: dlopen(/usr/local/lib/openmpi/mca_routed_cm.so, 9): Symbol not found: _orte_message_event_t_class
> Referenced from: /usr/local/lib/openmpi/mca_routed_cm.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_routed_cm.so (ignored)
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_routed_linear: dlopen(/usr/local/lib/openmpi/mca_routed_linear.so, 9): Symbol not found: _orte_message_event_t_class
> Referenced from: /usr/local/lib/openmpi/mca_routed_linear.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_routed_linear.so (ignored)
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_grpcomm_basic: dlopen(/usr/local/lib/openmpi/mca_grpcomm_basic.so, 9): Symbol not found: _opal_profile
> Referenced from: /usr/local/lib/openmpi/mca_grpcomm_basic.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_grpcomm_basic.so (ignored)
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_grpcomm_hier: dlopen(/usr/local/lib/openmpi/mca_grpcomm_hier.so, 9): Symbol not found: _orte_daemon_cmd_processor
> Referenced from: /usr/local/lib/openmpi/mca_grpcomm_hier.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_grpcomm_hier.so (ignored)
> [MacBook-Pro:18481] *** Process received signal ***
> [MacBook-Pro:18481] Signal: Segmentation fault: 11 (11)
> [MacBook-Pro:18481] Signal code: Address not mapped (1)
> [MacBook-Pro:18481] Failing at address: 0x14
> [MacBook-Pro:18481] [ 0] 2 libsystem_c.dylib 0x00007fff820308ea _sigtramp + 26
> [MacBook-Pro:18481] [ 1] 3 ??? 0x00007fff59070458 0x0 + 140734687020120
> [MacBook-Pro:18481] [ 2] 4 libopen-rte.5.dylib 0x0000000106bd7658 orte_rmaps_base_map_job + 984
> [MacBook-Pro:18481] [ 3] 5 libopen-rte.5.dylib 0x0000000106c1a0a0 opal_libevent2019_event_base_loop + 1888
> [MacBook-Pro:18481] [ 4] 6 mpirun 0x0000000106b916e1 orterun + 5137
> [MacBook-Pro:18481] [ 5] 7 mpirun 0x0000000106b90290 main + 32
> [MacBook-Pro:18481] [ 6] 8 libdyld.dylib 0x00007fff8ac597e1 start + 0
> [MacBook-Pro:18481] [ 7] 9 ??? 0x0000000000000004 0x0 + 4
> [MacBook-Pro:18481] *** End of error message ***
> Segmentation fault: 11
>
>
> for resolving it, i have exported the LD_LIBRARY_PATH = /usr/local/bin and I used the same configuration of my last openmpi's installation.
> Please help me to solve this issue.
>
> Thank you very much.
> _______________________________________________
> users mailing list
> users@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users

------------------------------

Message: 10
Date: Wed, 12 Dec 2012 06:54:28 -0800
From: Ralph Castain <rhc@open-mpi.org>
Subject: Re: [OMPI users] openmpi-1.7rc5 cannot install when build
with ./configure --with-ft=cr
To: Open MPI Users <users@open-mpi.org>
Message-ID: <EFB23DAB-8748-4EC9-ADA2-FB778A5CE110@open-mpi.org>
Content-Type: text/plain; charset=iso-8859-1

The checkpoint/restart code in the 1.7 branch is almost certainly broken as the developer/maintainer of that code graduated and left for a colder climate. We do not yet have someone to take their place, so the future of that capability is somewhat in doubt.

Afraid you'll have to stick with the 1.6 series for now.

On Dec 12, 2012, at 12:38 AM, Ifeanyi <ifeanyeg2012@gmail.com> wrote:

> Hi all,
>
> I am having trouble building openmpi-1.7rc5 with ../configure --with-ft=cr
>
> openmpi-1.7rc5# ./configure --with-ft=cr
> openmpi-1.7rc5# make all install
>
> error message:
> base/errmgr_base_fns.c:565:13: warning: ignoring return value of 'asprintf', declared with attribute warn_unused_result [-Wunused-result]
> base/errmgr_base_fns.c: In function 'orte_errmgr_base_migrate_state_str':
> base/errmgr_base_fns.c:384:17: warning: ignoring return value of 'asprintf', declared with attribute warn_unused_result [-Wunused-result]
> base/errmgr_base_fns.c: In function 'orte_errmgr_base_abort':
> base/errmgr_base_fns.c:244:18: warning: ignoring return value of 'vasprintf', declared with attribute warn_unused_result [-Wunused-result]
> make[2]: *** [base/errmgr_base_fns.lo] Error 1
> make[2]: Leaving directory `/home/abolap/Downloads/openmpi-1.7rc5/orte/mca/errmgr'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/home/abolap/Downloads/openmpi-1.7rc5/orte'
> make: *** [all-recursive] Error 1
>
> It install successfully when fault tolerance is not enabled on the build.
>
> Pls help.
>
> Regards - Ifeanyi
>
> _______________________________________________
> users mailing list
> users@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users

------------------------------

Message: 11
Date: Wed, 12 Dec 2012 16:33:11 +0100 (CET)
From: Siegmar Gross <Siegmar.Gross@informatik.hs-fulda.de>
Subject: [OMPI users] problem configuring openmpi-1.6.4a1r27643 on
Linux
To: users@open-mpi.org
Message-ID: <201212121533.qBCFXBKR009466@tyr.informatik.hs-fulda.de>
Content-Type: TEXT/plain; charset=us-ascii

Hi,

I tried to build openmpi-1.6.4a1r27643 on several platforms
(Solaris Sparc, Solaris x86_64, and Linux x86_64) with Solaris
Studio C (Sun C 5.12) in 32 and 64 bit mode. "configure" broke
on Linux (openSuSE Linux 12.1) for the 32 bit version with the
following error:

...
checking if Fortran 77 compiler supports INTEGER*16... yes
checking size of Fortran 77 INTEGER*16... configure: error:
Could not determine size of INTEGER*16
linpc1 openmpi-1.6.4-Linux.x86_64.32_cc 144

I could compile a 32 bit version of openmpi-1.9a1r27668 on the
machine without problems.

linpc1 openmpi-1.9-Linux.x86_64.32_cc 148 grep "INTEGER\*16"
log.configure.Linux.x86_64.32_cc
checking if Fortran compiler supports INTEGER*16... no
linpc1 openmpi-1.9-Linux.x86_64.32_cc 149

Does anybody have an idea why "configure" broke for
openmpi-1.6.4a1r27643 and how I can fix the problem? Thank you
very much for any help in advance.

Kind regards

Siegmar

------------------------------

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