Well, not sure what I can advise. Check to ensure that your LD_LIBRARY_PATH is pointing to the same installation where your mpirun is located. For whatever reason, the processes think they are singletons - i.e., that they were not actually started by mpirun.
You might also want to ask the mpi4py folks - we aren't very familiar with that package over here. It could be that you need to configure it for OpenMPI as opposed to mpich.
Yes I am sure I read from a mpi4py guide I already check the examples if fact this an example extracted from a guide…!! Evenmore this example if I use with mpich2 it runs very nicely, even though for the other code I need openmpi working =sMarianaOn Sep 25, 2012, at 8:00 PM, Ralph Castain <rhc.openmpi@gmail.com> wrote:_______________________________________________I don't think that is true, but I suggest you check the mpi4py examples. I believe all import does is import function definitions - it doesn't execute anything.
Sent from my iPadMPI_init() is actually called when import MPI module from MPi package...On Sep 25, 2012, at 5:17 PM, Ralph Castain wrote:You forgot to call MPI_Init at the beginning of your program._______________________________________________On Sep 25, 2012, at 2:08 PM, Mariana Vargas Magana <mmarianav@yahoo.com.mx> wrote:_______________________________________________HiI think I'am not understanding what you said , here is the hello.py and next the command mpirun…Thanks!#!/usr/bin/env python"""Parallel Hello World"""from mpi4py import MPIimport syssize = MPI.COMM_WORLD.Get_size()rank = MPI.COMM_WORLD.Get_rank()name = MPI.Get_processor_name()sys.stdout.write("Hello, World! I am process %d of %d on %s.\n"% (rank, size, name))~/bin/mpirun -np 70 python2.7 helloworld.pyHello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.Hello, World! I am process 0 of 1 on ferrari.On Sep 25, 2012, at 4:46 PM, Ralph Castain <rhc@open-mpi.org> wrote:The usual reason for this is that you aren't launching these processes correctly. How are you starting your job? Are you using mpirun?_______________________________________________
On Sep 25, 2012, at 1:43 PM, mariana Vargas <mmarianav@yahoo.com.mx> wrote:_______________________________________________HiI fact I found what is the origin of this problem and it is because all processes have rank 0, so I tested and in effect even when I send the clasical Hello.py give the same, how can I solved this?? Do I re installed every again???Help please...MarianaOn Sep 24, 2012, at 9:13 PM, Mariana Vargas Magana wrote:_______________________________________________Yes you are right this is what it says but if fact the weird thing is that not all times the error message appears….I send to 20 nodes and only one gives this message, is this normal…On Sep 24, 2012, at 8:00 PM, Ralph Castain <rhc@open-mpi.org> wrote:Well, as it says, your processes called MPI_Init, but at least one of them exited without calling MPI_Finalize. That violates the MPI rules and we therefore terminate the remaining processes._______________________________________________Check your code and see how/why you are doing that - you probably have a code path whereby a process exits without calling finalize.On Sep 24, 2012, at 4:37 PM, mariana Vargas <mmarianav@yahoo.com.mx> wrote:_______________________________________________
Hi all
I get this error when I run a paralelized python code in a cluster, could anyone give me an idea of what is happening? I'am new in this Thanks...
mpirun has exited due to process rank 2 with PID 10259 on
node f01 exiting improperly. There are two reasons this could occur:
1. this process did not call "init" before exiting, but others in
the job did. This can cause a job to hang indefinitely while it waits
for all processes to call "init". By rule, if one process calls "init",then ALL processes must call "init" prior to termination.
2. this process called "init", but exited without calling "finalize".
By rule, all processes that call "init" MUST call "finalize" prior to
exiting or it will be considered an "abnormal termination"
This may have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
Thanks!!
Dr. Mariana Vargas Magana
Astroparticule et Cosmologie - Bureau 409B
PHD student- Université Denis Diderot-Paris 7
10, rue Alice Domon et Léonie Duquet
75205 Paris Cedex - France
Tel. +33 (0)1 57 27 70 32
Fax. +33 (0)1 57 27 60 71
mariana@apc.univ-paris7.fr
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