Just to be sure, can u try
echo "${MPIRUN} -np ${NPROC} -hostfile ${ABSDIR}/hostlist -mca btl sm,openib,self --mca btl_openib_use_srq 1 ./hrm >> ${OUTFILE}_hrm 2>&1"
and check if you are indeed getting the correct argument.
 
If that looks fine, can u add --mca btl_openib_verbose 1 to the mpirun argument list, and see what it says?


 
On Tue, Feb 28, 2012 at 10:15 PM, Syed Ahsan Ali <ahsanshah01@gmail.com> wrote:
After creating new hostlist and making the scripts again it is working now and picking up the hostlist as u can see :
 
${MPIRUN} -np ${NPROC} -hostfile ${ABSDIR}/hostlist -mca btl sm,openib,self --mca btl_openib_use_srq 1 ./hrm >> ${OUTFILE}_hrm 2>&1
(The above command is used to submit job)
 
[pmdtest@pmd02 d00_dayfiles]$ tail -f *_hrm
mpirun -np 32 /home/MET/hrm/bin/hrm

but it just stays on this command and the model simulation don't start further. I can't understand this behavior because the simulation works fine when hostlist is not given as follows:
 
    ${MPIRUN} -np ${NPROC} ./hrm >> ${OUTFILE}_hrm 2>&1

 

 
 

On Tue, Feb 28, 2012 at 3:49 PM, Jeffrey Squyres <jsquyres@cisco.com> wrote:
Yes, this is known behavior for our CLI parser.  We could probably improve that a bit...

On Feb 28, 2012, at 4:55 AM, Ralph Castain wrote:

>
> On Feb 28, 2012, at 2:52 AM, Reuti wrote:
>
>> Am 28.02.2012 um 10:21 schrieb Ralph Castain:
>>
>>> Afraid I have to agree with the prior reply - sounds like NPROC isn't getting defined, which causes your cmd line to look like your original posting.
>>
>> Maybe the best to investigate this is to `echo` $MPIRUN and $NPROC.
>>
>> But: is this the intended behavior of mpirun? It looks like -np is eating -hostlist as a numeric argument? Shouldn't it complain about: argument for -np missing or argument not being numeric?
>
> Probably - I'm sure that the atol is returning zero, which should cause an error output. I'll check.
>
>
>>
>> -- Reuti
>>
>>
>>>
>>> On Feb 27, 2012, at 10:29 PM, Syed Ahsan Ali wrote:
>>>
>>>> The following command in used in script for job submission
>>>>
>>>> ${MPIRUN} -np ${NPROC} -hostfile ${ABSDIR}/hostlist -mca btl sm,openib,self --mca btl_openib_use_srq 1 ./hrm >> ${OUTFILE}_hrm 2>&1
>>>> where NPROC in defined in someother file. The same application is running on the other system with same configuration.
>>>>
>>>> On Tue, Feb 28, 2012 at 10:12 AM, PukkiMonkey <pukkimonkey@gmail.com> wrote:
>>>> No of processes missing after -np
>>>> Should be something like:
>>>> mpirun -np 256 ./exec
>>>>
>>>>
>>>>
>>>> Sent from my iPhone
>>>>
>>>> On Feb 27, 2012, at 8:47 PM, Syed Ahsan Ali <ahsanshah01@gmail.com> wrote:
>>>>
>>>>> Dear All,
>>>>>
>>>>> I am running an application with mpirun but it gives following error, it is not picking up hostlist, there are other applications which run well with hostlist but it just gives following error with
>>>>>
>>>>>
>>>>> [pmdtest@pmd02 d00_dayfiles]$ tail -f *_hrm
>>>>> mpirun -np  /home/MET/hrm/bin/hrm
>>>>> --------------------------------------------------------------------------
>>>>> Could not execute the executable "/home/MET/hrm/bin/hostlist": Exec format error
>>>>>
>>>>> This could mean that your PATH or executable name is wrong, or that you do not
>>>>> have the necessary permissions.  Please ensure that the executable is able to be
>>>>> found and executed.
>>>>>
>>>>> --------------------------------------------------------------------------
>>>>>
>>>>> Following the permission of the hostlist directory. Please help me to remove this error.
>>>>>
>>>>> [pmdtest@pmd02 bin]$ ll
>>>>> total 7570
>>>>> -rwxrwxrwx 1 pmdtest pmdtest 2517815 Feb 16  2012 gme2hrm
>>>>> -rwxrwxrwx 1 pmdtest pmdtest       0 Feb 16  2012 gme2hrm.map
>>>>> -rwxrwxrwx 1 pmdtest pmdtest     473 Jan 30  2012 hostlist
>>>>> -rwxrwxrwx 1 pmdtest pmdtest 5197698 Feb 16  2012 hrm
>>>>> -rwxrwxrwx 1 pmdtest pmdtest       0 Dec 31  2010 hrm.map
>>>>> -rwxrwxrwx 1 pmdtest pmdtest    1680 Dec 31  2010 mpd.hosts
>>>>>
>>>>>
>>>>> Thank you and Regards
>>>>> Ahsan
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> users mailing list
>>>>> users@open-mpi.org
>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>>
>>>> _______________________________________________
>>>> users mailing list
>>>> users@open-mpi.org
>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>>
>>>>
>>>>
>>>> --
>>>> Syed Ahsan Ali Bokhari
>>>> Electronic Engineer (EE)
>>>>
>>>> Research & Development Division
>>>> Pakistan Meteorological Department H-8/4, Islamabad.
>>>> Phone # off  +92518358714
>>>> Cell # +923155145014
>>>>
>>>> _______________________________________________
>>>> users mailing list
>>>> users@open-mpi.org
>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>
>>> _______________________________________________
>>> users mailing list
>>> users@open-mpi.org
>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>>
>> _______________________________________________
>> users mailing list
>> users@open-mpi.org
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
> _______________________________________________
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> users@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users


--
Jeff Squyres
jsquyres@cisco.com
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--
Syed Ahsan Ali Bokhari
Electronic Engineer (EE)

Research & Development Division
Pakistan Meteorological Department H-8/4, Islamabad.
Phone # off  +92518358714
Cell # +923155145014