diff -ur openmpi-1.4-orig/autogen.sh openmpi-1.4/autogen.sh --- openmpi-1.4-orig/autogen.sh 2009-12-08 12:36:44.000000000 -0800 +++ openmpi-1.4/autogen.sh 2009-12-10 06:51:57.000000000 -0800 @@ -574,6 +574,35 @@ run_and_check $ompi_autoconf run_and_check $ompi_automake --foreign -a --copy --include-deps + + # Ugh. LT <=2.2.6b need to be patched for the PGI 10.0 fortran + # compiler name (pgfortran). The following comes from the + # upstream LT patches: + # http://lists.gnu.org/archive/html/libtool-patches/2009-11/msg00012.html + # http://lists.gnu.org/archive/html/bug-libtool/2009-11/msg00045.html + # Note that that patch is part of Libtool (which is not in this + # OMPI source tree); we can't fix it. So all we can do is patch + # the resulting configure script. :-( + echo " ++ Patching configure for Libtool PGI 10 fortran compiler name" + rm -f configure.patched + sed -e 's/gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn/gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn/' \ + -e 's/pgcc\* | pgf77\* | pgf90\* | pgf95\*)/pgcc* | pgf77* | pgf90* | pgf95* | pgfortran*)/' \ + -e 's/pgf77\* | pgf90\* | pgf95\*)/pgf77* | pgf90* | pgf95* | pgfortran*)/' \ + configure > configure.patched + cp configure.patched configure + rm -f configure.patched + + # Similar issue as above -- the PGI 10 version number broke <=LT + # 2.2.6b's version number checking regexps. Again, we can't fix + # the Libtool install; all we can do is patch the resulting + # configure script. :-( The following comes from the upstream + # patch: + # http://lists.gnu.org/archive/html/libtool-patches/2009-11/msg00016.html + echo " ++ Patching configure for Libtool PGI version number regexps" + rm -f configure.patched + sed -e 's/\*pgCC\\ \[1-5\]\* | \*pgcpp\\ \[1-5\]\*/*pgCC\\ [1-5]\.* | *pgcpp\\ [1-5]\.*/' configure > configure.patched + cp configure.patched configure + rm -f configure.patched } diff -ur openmpi-1.4-orig/configure openmpi-1.4/configure --- openmpi-1.4-orig/configure 2009-12-08 13:09:51.000000000 -0800 +++ openmpi-1.4/configure 2009-12-10 06:54:51.000000000 -0800 @@ -171387,7 +171387,7 @@ ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_f77_compiler_gnu if test -n "$ac_tool_prefix"; then - for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn + for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 @@ -171431,7 +171431,7 @@ fi if test -z "$F77"; then ac_ct_F77=$F77 - for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn + for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn do # Extract the first word of "$ac_prog", so it can be a program name with args. set dummy $ac_prog; ac_word=$2 @@ -171660,7 +171660,7 @@ ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_fc_compiler_gnu if test -n "$ac_tool_prefix"; then - for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 + for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 @@ -171704,7 +171704,7 @@ fi if test -z "$FC"; then ac_ct_FC=$FC - for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 + for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 do # Extract the first word of "$ac_prog", so it can be a program name with args. set dummy $ac_prog; ac_word=$2 @@ -172850,7 +172850,7 @@ lt_prog_compiler_pic='--shared' lt_prog_compiler_static='--static' ;; - pgcc* | pgf77* | pgf90* | pgf95*) + pgcc* | pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group compilers (*not* the Pentium gcc compiler, # which looks to be a dead project) lt_prog_compiler_wl='-Wl,' @@ -173407,7 +173407,7 @@ whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag' ;; - pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers + pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group f77 and f90 compilers whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag -Mnomain' ;; ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 @@ -177114,7 +177114,7 @@ pgCC* | pgcpp*) # Portland Group C++ compiler case `$CC -V` in - *pgCC\ [1-5]* | *pgcpp\ [1-5]*) + *pgCC\ [1-5].* | *pgcpp\ [1-5].*) prelink_cmds_CXX='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~ @@ -179492,7 +179492,7 @@ lt_prog_compiler_pic_F77='--shared' lt_prog_compiler_static_F77='--static' ;; - pgcc* | pgf77* | pgf90* | pgf95*) + pgcc* | pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group compilers (*not* the Pentium gcc compiler, # which looks to be a dead project) lt_prog_compiler_wl_F77='-Wl,' @@ -180034,7 +180034,7 @@ whole_archive_flag_spec_F77='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag' ;; - pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers + pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group f77 and f90 compilers whole_archive_flag_spec_F77='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag -Mnomain' ;; ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 @@ -182193,7 +182193,7 @@ lt_prog_compiler_pic_FC='--shared' lt_prog_compiler_static_FC='--static' ;; - pgcc* | pgf77* | pgf90* | pgf95*) + pgcc* | pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group compilers (*not* the Pentium gcc compiler, # which looks to be a dead project) lt_prog_compiler_wl_FC='-Wl,' @@ -182735,7 +182735,7 @@ whole_archive_flag_spec_FC='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag' ;; - pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers + pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group f77 and f90 compilers whole_archive_flag_spec_FC='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag -Mnomain' ;; ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 diff -ur openmpi-1.4-orig/ompi/contrib/vt/vt/configure openmpi-1.4/ompi/contrib/vt/vt/configure --- openmpi-1.4-orig/ompi/contrib/vt/vt/configure 2009-12-08 12:41:34.000000000 -0800 +++ openmpi-1.4/ompi/contrib/vt/vt/configure 2009-12-10 06:52:25.000000000 -0800 @@ -5033,7 +5033,7 @@ ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_f77_compiler_gnu if test -n "$ac_tool_prefix"; then - for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn + for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 @@ -5077,7 +5077,7 @@ fi if test -z "$F77"; then ac_ct_F77=$F77 - for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn + for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn do # Extract the first word of "$ac_prog", so it can be a program name with args. set dummy $ac_prog; ac_word=$2 @@ -5299,7 +5299,7 @@ ac_link='$FC -o conftest$ac_exeext $FCFLAGS $LDFLAGS $ac_fcflags_srcext conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_fc_compiler_gnu if test -n "$ac_tool_prefix"; then - for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 + for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 @@ -5343,7 +5343,7 @@ fi if test -z "$FC"; then ac_ct_FC=$FC - for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 + for ac_prog in gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn xlf90 f90 pgf90 pghpf epcf90 g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 do # Extract the first word of "$ac_prog", so it can be a program name with args. set dummy $ac_prog; ac_word=$2 diff -ur openmpi-1.4-orig/ompi/contrib/vt/vt/extlib/otf/configure openmpi-1.4/ompi/contrib/vt/vt/extlib/otf/configure --- openmpi-1.4-orig/ompi/contrib/vt/vt/extlib/otf/configure 2009-12-08 12:41:47.000000000 -0800 +++ openmpi-1.4/ompi/contrib/vt/vt/extlib/otf/configure 2009-12-10 06:52:33.000000000 -0800 @@ -8881,7 +8881,7 @@ lt_prog_compiler_pic='--shared' lt_prog_compiler_static='--static' ;; - pgcc* | pgf77* | pgf90* | pgf95*) + pgcc* | pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group compilers (*not* the Pentium gcc compiler, # which looks to be a dead project) lt_prog_compiler_wl='-Wl,' @@ -9438,7 +9438,7 @@ whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag' ;; - pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers + pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group f77 and f90 compilers whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag -Mnomain' ;; ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 @@ -13145,7 +13145,7 @@ pgCC* | pgcpp*) # Portland Group C++ compiler case `$CC -V` in - *pgCC\ [1-5]* | *pgcpp\ [1-5]*) + *pgCC\ [1-5].* | *pgcpp\ [1-5].*) prelink_cmds_CXX='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~ diff -ur openmpi-1.4-orig/ompi/mca/io/romio/romio/configure openmpi-1.4/ompi/mca/io/romio/romio/configure --- openmpi-1.4-orig/ompi/mca/io/romio/romio/configure 2009-12-08 12:41:19.000000000 -0800 +++ openmpi-1.4/ompi/mca/io/romio/romio/configure 2009-12-10 06:52:15.000000000 -0800 @@ -4332,7 +4332,7 @@ ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_f77_compiler_gnu if test -n "$ac_tool_prefix"; then - for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn + for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 @@ -4376,7 +4376,7 @@ fi if test -z "$F77"; then ac_ct_F77=$F77 - for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn + for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn do # Extract the first word of "$ac_prog", so it can be a program name with args. set dummy $ac_prog; ac_word=$2 @@ -16171,7 +16171,7 @@ ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_f77_compiler_gnu if test -n "$ac_tool_prefix"; then - for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn + for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 @@ -16215,7 +16215,7 @@ fi if test -z "$F77"; then ac_ct_F77=$F77 - for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgf95 lf95 ftn + for ac_prog in g77 xlf f77 frt pgf77 cf77 fort77 fl32 af77 xlf90 f90 pgf90 pghpf epcf90 gfortran g95 xlf95 f95 fort ifort ifc efc pgfortran pgf95 lf95 ftn do # Extract the first word of "$ac_prog", so it can be a program name with args. set dummy $ac_prog; ac_word=$2 @@ -17126,7 +17126,7 @@ lt_prog_compiler_pic='--shared' lt_prog_compiler_static='--static' ;; - pgcc* | pgf77* | pgf90* | pgf95*) + pgcc* | pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group compilers (*not* the Pentium gcc compiler, # which looks to be a dead project) lt_prog_compiler_wl='-Wl,' @@ -17683,7 +17683,7 @@ whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag' ;; - pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers + pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group f77 and f90 compilers whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag -Mnomain' ;; ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 @@ -20840,7 +20840,7 @@ lt_prog_compiler_pic_F77='--shared' lt_prog_compiler_static_F77='--static' ;; - pgcc* | pgf77* | pgf90* | pgf95*) + pgcc* | pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group compilers (*not* the Pentium gcc compiler, # which looks to be a dead project) lt_prog_compiler_wl_F77='-Wl,' @@ -21382,7 +21382,7 @@ whole_archive_flag_spec_F77='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag' ;; - pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers + pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group f77 and f90 compilers whole_archive_flag_spec_F77='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' tmp_addflag=' $pic_flag -Mnomain' ;; ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64