#!/bin/bash export CC=gcc export CXX=g++ export FC=gfortran export F77=gfortran export CFLAGS="-m32" export CXXFLAGS="-m32" export FFLAGS="-m32" export FCFLAGS="-m32" export LDFLAGS="-L/usr/lib" ./configure --prefix=/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b --build=i686-pc-linux-gnu --with-bproc --with-gm --enable-io-romio --with-romio --with-io-romio-flags='--build=i686-pc-linux-gnu' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes ============================================================================ == Configuring Open MPI ============================================================================ *** Checking versions checking Open MPI version... 1.0.2 checking Open MPI Subversion repository version... r9571 checking Open Run-Time Environment (ORTE) version... 1.0.2 checking ORTE Subversion repository version... r9571 checking Open Portable Access Layer (OPAL) version... 1.0.2 checking OPAL Subversion repository version... r9571 *** Initialization, setup configure: builddir: /net/scratch1/dog/openmpi/openmpi-1.0.2 configure: srcdir: /net/scratch1/dog/openmpi/openmpi-1.0.2 checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu installing to directory "/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b" *** Configuration options checking Whether to run code coverage... no checking whether to debug memory usage... no checking whether to profile memory usage... no checking if want developer-level compiler pickyness... no checking if want developer-level debugging code... no checking if want Fortran 77 bindings... yes checking if want Fortran 90 bindings... yes checking whether to enable PMPI... yes checking if want C++ bindings... yes checking if want to enable weak symbol support... yes checking if want run-time MPI parameter checking... runtime checking if want to install OMPI header files... no checking if want pretty-print stacktrace... yes checking if want deprecated executable names... no checking if want MPI-2 one-sided empty shell functions... no checking max supported array dimension in F90 MPI bindings... 4 checking if pty support should be enabled... yes checking if user wants dlopen support... yes checking if heterogeneous support should be enabled... yes checking if want trace file debugging... no ============================================================================ == Compiler and preprocessor tests ============================================================================ *** C compiler and preprocessor checking for style of include used by make... GNU checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking if compiler impersonates gcc... no checking if gcc supports -finline-functions... yes checking if gcc supports -fno-strict-aliasing... yes configure: WARNING: -fno-strict-aliasing has been added to CFLAGS checking for C optimization flags... -O3 -DNDEBUG -m32 -fno-strict-aliasing checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for long long... yes checking for long double... yes checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking for mode_t... yes checking for char... yes checking size of char... 1 checking for short... yes checking size of short... 2 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 4 checking for long long... (cached) yes checking size of long long... 8 checking for long double... (cached) yes checking size of long double... 12 checking for float... yes checking size of float... 4 checking for double... yes checking size of double... 8 checking for void *... yes checking size of void *... 4 checking for size_t... yes checking size of size_t... 4 checking alignment of char... 1 checking alignment of short... 2 checking alignment of wchar_t... 4 checking alignment of int... 4 checking alignment of long... 4 checking alignment of long long... 4 checking alignment of float... 4 checking alignment of double... 4 checking alignment of long double... 4 checking alignment of void *... 4 checking for C bool type... no checking for inline... __inline__ checking for C/C++ restrict keyword... __restrict checking for weak symbol support... yes *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking if compiler impersonates g++... no checking if g++ supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if want C++ exception handling... no checking for C++ template_repository_directory... not used checking for C++ compiler template parameters... none needed checking for C++ optimization flags... -O3 -DNDEBUG -m32 -finline-functions checking for bool... yes checking size of bool... 1 checking alignment of bool... 1 *** Assembler checking directive for setting text section... .text checking directive for exporting symbols... .globl checking suffix for labels... : checking prefix for global symbol labels... checking for BSD-compatible nm... /usr/bin/nm -B checking prefix for lsym labels... .L checking prefix for function in .type... @ checking if .size is needed... yes checking if .align directive takes logarithmic value... no checking for objdump... objdump checking if .note.GNU-stack is needed... yes checking for fgrep... grep -F checking whether to enable smp locks... yes checking if gcc supports GCC inline assembly... yes checking if gcc supports DEC inline assembly... no checking if gcc supports XLC inline assembly... no checking if g++ supports GCC inline assembly... yes checking if g++ supports DEC inline assembly... no checking if g++ supports XLC inline assembly... no checking for assembly format... default-.text-.globl-:--.L-@-1-0-1-1-1 checking for asssembly architecture... IA32 checking for perl... perl checking for pre-built assembly file... yes (atomic-ia32-linux.s) checking for atomic assembly filename... atomic-ia32-linux.s *** Fortran 77 compiler checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking gfortran external symbol convention... double underscore checking if FORTRAN compiler supports LOGICAL... yes checking size of FORTRAN LOGICAL... 4 checking for C type corresponding to Fortran LOGICAL... int checking alignment of FORTRAN LOGICAL... 4 checking if FORTRAN compiler supports INTEGER... yes checking size of FORTRAN INTEGER... 4 checking for C type corresponding to Fortran INTEGER... int checking alignment of FORTRAN INTEGER... 4 checking if FORTRAN compiler supports INTEGER*1... yes checking size of FORTRAN INTEGER*1... 1 checking for C type corresponding to Fortran INTEGER*1... char checking alignment of FORTRAN INTEGER*1... 1 checking if FORTRAN compiler supports INTEGER*2... yes checking size of FORTRAN INTEGER*2... 2 checking for C type corresponding to Fortran INTEGER*2... short checking alignment of FORTRAN INTEGER*2... 2 checking if FORTRAN compiler supports INTEGER*4... yes checking size of FORTRAN INTEGER*4... 4 checking for C type corresponding to Fortran INTEGER*4... int checking alignment of FORTRAN INTEGER*4... 4 checking if FORTRAN compiler supports INTEGER*8... yes checking size of FORTRAN INTEGER*8... 8 checking for C type corresponding to Fortran INTEGER*8... long long checking alignment of FORTRAN INTEGER*8... 8 checking if FORTRAN compiler supports INTEGER*16... no checking if FORTRAN compiler supports REAL... yes checking size of FORTRAN REAL... 4 checking for C type corresponding to Fortran REAL... float checking alignment of FORTRAN REAL... 4 checking if FORTRAN compiler supports REAL*4... yes checking size of FORTRAN REAL*4... 4 checking for C type corresponding to Fortran REAL*4... float checking alignment of FORTRAN REAL*4... 4 checking if FORTRAN compiler supports REAL*8... yes checking size of FORTRAN REAL*8... 8 checking for C type corresponding to Fortran REAL*8... double checking alignment of FORTRAN REAL*8... 8 checking if FORTRAN compiler supports REAL*16... no checking if FORTRAN compiler supports DOUBLE PRECISION... yes checking size of FORTRAN DOUBLE PRECISION... 8 checking for C type corresponding to Fortran DOUBLE PRECISION... double checking alignment of FORTRAN DOUBLE PRECISION... 8 checking if FORTRAN compiler supports COMPLEX... yes checking size of FORTRAN COMPLEX... 8 checking alignment of FORTRAN COMPLEX... 4 checking if FORTRAN compiler supports COMPLEX*8... yes checking size of FORTRAN COMPLEX*8... 8 checking alignment of FORTRAN COMPLEX*8... 4 checking if FORTRAN compiler supports COMPLEX*16... yes checking size of FORTRAN COMPLEX*16... 16 checking alignment of FORTRAN COMPLEX*16... 8 checking if FORTRAN compiler supports COMPLEX*32... no checking for max fortran MPI handle index... ( 0x7fffffff < 2147483647 ? 0x7fffffff : 2147483647 ) checking FORTRAN value for .TRUE. logical type... 1 checking for correct handling of FORTRAN logical arrays... yes *** Fortran 90/95 compiler checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .f90 files... none checking whether gfortran and gfortran compilers are compatible... yes checking for FORTRAN compiler module include flag... -I checking if FORTRAN compiler supports integer(selected_int_kind(2))... yes checking size of FORTRAN integer(selected_int_kind(2))... 1 checking alignment of FORTRAN integer(selected_int_kind(2))... 1 checking size of FORTRAN logical(selected_int_kind(2))... 1 checking alignment of FORTRAN logical(selected_int_kind(2))... 1 checking if FORTRAN compiler supports integer(selected_int_kind(4))... yes checking size of FORTRAN integer(selected_int_kind(4))... 2 checking alignment of FORTRAN integer(selected_int_kind(4))... 2 checking size of FORTRAN logical(selected_int_kind(4))... 2 checking alignment of FORTRAN logical(selected_int_kind(4))... 2 checking if FORTRAN compiler supports integer(selected_int_kind(9))... yes checking size of FORTRAN integer(selected_int_kind(9))... 4 checking alignment of FORTRAN integer(selected_int_kind(9))... 4 checking size of FORTRAN logical(selected_int_kind(9))... 4 checking alignment of FORTRAN logical(selected_int_kind(9))... 4 checking if FORTRAN compiler supports integer(selected_int_kind(18))... yes checking size of FORTRAN integer(selected_int_kind(18))... 8 checking alignment of FORTRAN integer(selected_int_kind(18))... 4 checking size of FORTRAN logical(selected_int_kind(18))... 8 checking alignment of FORTRAN logical(selected_int_kind(18))... 4 checking if FORTRAN compiler supports integer(selected_int_kind(19))... no checking if FORTRAN compiler supports real(selected_real_kind(6))... yes checking size of FORTRAN real(selected_real_kind(6))... 4 checking size of FORTRAN complex(selected_real_kind(6))... 8 checking alignment of FORTRAN real(selected_real_kind(6))... 4 checking alignment of FORTRAN complex(selected_real_kind(6))... 4 checking precision of FORTRAN real(selected_real_kind(6))... 6 checking precision of FORTRAN complex(selected_real_kind(6))... 6 checking range of FORTRAN real(selected_real_kind(6))... 37 checking range of FORTRAN complex(selected_real_kind(6))... 37 checking if FORTRAN compiler supports real(selected_real_kind(15))... yes checking size of FORTRAN real(selected_real_kind(15))... 8 checking size of FORTRAN complex(selected_real_kind(15))... 16 checking alignment of FORTRAN real(selected_real_kind(15))... 4 checking alignment of FORTRAN complex(selected_real_kind(15))... 4 checking precision of FORTRAN real(selected_real_kind(15))... 15 checking precision of FORTRAN complex(selected_real_kind(15))... 15 checking range of FORTRAN real(selected_real_kind(15))... 307 checking range of FORTRAN complex(selected_real_kind(15))... 307 checking if FORTRAN compiler supports real(selected_real_kind(31))... no checking size of FORTRAN logical... 4 checking alignment of FORTRAN logical... 4 checking size of FORTRAN integer... 4 checking alignment of FORTRAN integer... 4 checking size of FORTRAN real... 4 checking alignment of FORTRAN real... 4 checking size of FORTRAN real(kind(1.D0))... 8 checking alignment of FORTRAN real(kind(1.D0))... 4 checking size of FORTRAN complex... 8 checking alignment of FORTRAN complex... 4 checking size of FORTRAN complex(kind(1.D0))... 16 checking alignment of FORTRAN complex(kind(1.D0))... 4 checking kind for FORTRAN selected_int_kind(18)... 8 checking kind for FORTRAN selected_int_kind(9)... 4 ============================================================================ == Header file tests ============================================================================ checking alloca.h usability... yes checking alloca.h presence... yes checking for alloca.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking for inttypes.h... (cached) yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking libutil.h usability... no checking libutil.h presence... no checking for libutil.h... no checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking pty.h usability... yes checking pty.h presence... yes checking for pty.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stropts.h usability... yes checking stropts.h presence... yes checking for stropts.h... yes checking sys/fcntl.h usability... yes checking sys/fcntl.h presence... yes checking for sys/fcntl.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/queue.h usability... yes checking sys/queue.h presence... yes checking for sys/queue.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/stat.h... (cached) yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/tree.h usability... no checking sys/tree.h presence... no checking for sys/tree.h... no checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking ulimit.h usability... yes checking ulimit.h presence... yes checking for ulimit.h... yes checking for unistd.h... (cached) yes checking util.h usability... no checking util.h presence... no checking for util.h... no checking utmp.h usability... yes checking utmp.h presence... yes checking for utmp.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for net/if.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking if works... yes ============================================================================ == Type tests ============================================================================ checking for pid_t... yes checking size of pid_t... 4 checking for socklen_t... yes checking for struct sockaddr_in... yes checking if SA_RESTART defined in signal.h... yes checking for sa_len in struct sockaddr... no checking for struct dirent.d_type... yes checking for siginfo_t.si_fd... yes ============================================================================ == Library and Function tests ============================================================================ checking for openpty in -lutil... yes checking for gethostbyname in -lnsl... yes checking for socket in -lsocket... no checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for openpty... yes checking for isatty... yes checking for htonl... yes checking for ntohl... yes checking for htons... yes checking for ntohs... yes checking for getpwuid... yes checking for fork... yes checking for waitpid... yes checking for execve... yes checking for pipe... yes checking for setsid... yes checking for mmap... yes checking if we need -lexecinfo for backtrace... no checking for backtrace... yes checking if we need -lgen for dirname... no checking for dirname... yes checking if we need -lm for ceil... yes checking for ceil... yes checking for asprintf... (cached) yes checking for snprintf... (cached) yes checking for vasprintf... (cached) yes checking for vsnprintf... (cached) yes checking for openpty... (cached) yes checking for isatty... (cached) yes checking for htonl... (cached) yes checking for ntohl... (cached) yes checking for htons... (cached) yes checking for ntohs... (cached) yes checking for getpwuid... (cached) yes checking for fork... (cached) yes checking for waitpid... (cached) yes checking for execve... (cached) yes checking for pipe... (cached) yes checking for ptsname... yes checking for setsid... (cached) yes checking for mmap... (cached) yes checking for mallopt... yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking whether __func__ is declared... yes checking if we need -lrt for sched_yield... no checking for sched_yield... yes checking if we need -lexecinfo for backtrace... (cached) no checking for backtrace... (cached) yes checking if we need -lgen for dirname... (cached) no checking for dirname... (cached) yes checking for ceil in -lm... yes ============================================================================ == System-specific tests ============================================================================ checking checking for type of MPI_Offset... long long checking checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG checking whether byte ordering is bigendian... no checking for broken qsort... no checking if C compiler and POSIX threads work as is... no checking if C++ compiler and POSIX threads work as is... no checking if F77 compiler and POSIX threads work as is... no checking if C compiler and POSIX threads work with -Kthread... no checking if C compiler and POSIX threads work with -kthread... no checking if C compiler and POSIX threads work with -pthread... yes checking if C++ compiler and POSIX threads work with -Kthread... no checking if C++ compiler and POSIX threads work with -kthread... no checking if C++ compiler and POSIX threads work with -pthread... yes checking if F77 compiler and POSIX threads work with -Kthread... no checking if F77 compiler and POSIX threads work with -kthread... no checking if F77 compiler and POSIX threads work with -pthread... yes checking for working POSIX threads package... yes checking if C compiler and Solaris threads work... no checking if C++ compiler and Solaris threads work... no checking if F77 compiler and Solaris threads work... no checking for working Solaris threads package... no checking for type of thread support... posix checking if threads have different pids (pthreads on linux)... yes checking if want MPI thread support... no checking if want asynchronous progress thread support... no checking whether ln -s works... yes checking for flex... flex checking for yywrap in -lfl... no checking for yywrap in -ll... no checking lex output file root... lex.yy checking whether yytext is a pointer... no checking if build filesystem is case sensitive... yes checking if configuring for case sensitive filesystem... yes ============================================================================ == Modular Component Architecture (MCA) setup ============================================================================ checking for subdir args... '--prefix=/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b' '--build=i686-pc-linux-gnu' '--with-bproc' '--with-gm' '--enable-io-romio' '--with-romio' '--with-io-romio-flags=--build=i686-pc-linux-gnu' 'CC=gcc' 'CFLAGS=-m32' 'CXXFLAGS=-m32' 'CXX=g++' 'F77=gfortran' 'FCFLAGS=-m32' 'FC=gfortran' 'FFLAGS=-m32' 'LDFLAGS=-L/usr/lib' 'build_alias=i686-pc-linux-gnu' checking for gcc... gcc checking dependency style of gcc... gcc3 checking which components should be disabled... checking which components should be direct-linked into the library... checking which components should be run-time loadable... all checking which components should be static... none checking for projects containing MCA frameworks... opal, orte, ompi *** Configuring MCA for opal checking for frameworks for opal... maffinity, memory, paffinity, timer +++ Configuring MCA framework maffinity checking for no configure components in framework maffinity... first_use checking for m4 configure components in framework maffinity... libnuma --- MCA component maffinity:first_use (no configuration) checking for MCA component maffinity:first_use compile mode... dso checking if MCA component maffinity:first_use can compile... yes --- MCA component maffinity:libnuma (m4 configuration macro) checking for MCA component maffinity:libnuma compile mode... dso checking numa.h usability... yes checking numa.h presence... yes checking for numa.h... yes looking for library without search path checking for numa_available in -lnuma... no checking if MCA component maffinity:libnuma can compile... no +++ Configuring MCA framework memory checking for no configure components in framework memory... checking for m4 configure components in framework memory... darwin, malloc_hooks, ptmalloc2, malloc_interpose --- MCA component memory:darwin (m4 configuration macro) checking for MCA component memory:darwin compile mode... static checking malloc/malloc.h usability... no checking malloc/malloc.h presence... no checking for malloc/malloc.h... no checking if MCA component memory:darwin can compile... no --- MCA component memory:malloc_hooks (m4 configuration macro) checking for MCA component memory:malloc_hooks compile mode... static checking for malloc.h... (cached) yes checking whether __malloc_initialize_hook is declared... yes checking for malloc_usable_size... yes checking for dlsym in -ldl... yes checking if MCA component memory:malloc_hooks can compile... yes --- MCA component memory:ptmalloc2 (m4 configuration macro) checking for MCA component memory:ptmalloc2 compile mode... static checking if MCA component memory:ptmalloc2 can compile... no --- MCA component memory:malloc_interpose (m4 configuration macro) checking for MCA component memory:malloc_interpose compile mode... static checking if MCA component memory:malloc_interpose can compile... no +++ Configuring MCA framework paffinity checking for no configure components in framework paffinity... checking for m4 configure components in framework paffinity... linux, solaris --- MCA component paffinity:linux (m4 configuration macro) checking for MCA component paffinity:linux compile mode... dso checking for sched_setaffinity... yes checking for cpu_set_t... yes checking whether CPU_ZERO is broken... no checking how many parameters sched_setaffinity() takes... 3 checking if MCA component paffinity:linux can compile... yes --- MCA component paffinity:solaris (m4 configuration macro) checking for MCA component paffinity:solaris compile mode... dso checking for processor_bind... no checking if MCA component paffinity:solaris can compile... no +++ Configuring MCA framework timer checking for no configure components in framework timer... checking for m4 configure components in framework timer... aix, altix, darwin, solaris, linux --- MCA component timer:aix (m4 configuration macro) checking for MCA component timer:aix compile mode... static checking for time_base_to_time... no checking if MCA component timer:aix can compile... no --- MCA component timer:altix (m4 configuration macro) checking for MCA component timer:altix compile mode... static checking sn/mmtimer.h usability... no checking sn/mmtimer.h presence... no checking for sn/mmtimer.h... no checking if MCA component timer:altix can compile... no --- MCA component timer:darwin (m4 configuration macro) checking for MCA component timer:darwin compile mode... static checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for mach_absolute_time... no checking if MCA component timer:darwin can compile... no --- MCA component timer:solaris (m4 configuration macro) checking for MCA component timer:solaris compile mode... static checking for gethrtime... no checking if MCA component timer:solaris can compile... no --- MCA component timer:linux (m4 configuration macro) checking for MCA component timer:linux compile mode... static checking if MCA component timer:linux can compile... yes *** Configuring MCA for orte checking for frameworks for orte... errmgr, gpr, iof, ns, oob, pls, ras, rds, rmaps, rmgr, rml, schema, sds, soh +++ Configuring MCA framework errmgr checking for no configure components in framework errmgr... checking for m4 configure components in framework errmgr... +++ Configuring MCA framework gpr checking for no configure components in framework gpr... null, proxy, replica checking for m4 configure components in framework gpr... --- MCA component gpr:null (no configuration) checking for MCA component gpr:null compile mode... dso checking if MCA component gpr:null can compile... yes --- MCA component gpr:proxy (no configuration) checking for MCA component gpr:proxy compile mode... dso checking if MCA component gpr:proxy can compile... yes --- MCA component gpr:replica (no configuration) checking for MCA component gpr:replica compile mode... dso checking if MCA component gpr:replica can compile... yes +++ Configuring MCA framework iof checking for no configure components in framework iof... proxy, svc checking for m4 configure components in framework iof... --- MCA component iof:proxy (no configuration) checking for MCA component iof:proxy compile mode... dso checking if MCA component iof:proxy can compile... yes --- MCA component iof:svc (no configuration) checking for MCA component iof:svc compile mode... dso checking if MCA component iof:svc can compile... yes +++ Configuring MCA framework ns checking for no configure components in framework ns... proxy, replica checking for m4 configure components in framework ns... --- MCA component ns:proxy (no configuration) checking for MCA component ns:proxy compile mode... dso checking if MCA component ns:proxy can compile... yes --- MCA component ns:replica (no configuration) checking for MCA component ns:replica compile mode... dso checking if MCA component ns:replica can compile... yes +++ Configuring MCA framework oob checking for no configure components in framework oob... checking for m4 configure components in framework oob... tcp --- MCA component oob:tcp (m4 configuration macro) checking for MCA component oob:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component oob:tcp can compile... yes +++ Configuring MCA framework pls checking for no configure components in framework pls... daemon, proxy checking for m4 configure components in framework pls... bproc, bproc_orted, fork, poe, rsh, slurm, tm, xgrid --- MCA component pls:daemon (no configuration) checking for MCA component pls:daemon compile mode... dso checking if MCA component pls:daemon can compile... yes --- MCA component pls:proxy (no configuration) checking for MCA component pls:proxy compile mode... dso checking if MCA component pls:proxy can compile... yes --- MCA component pls:bproc (m4 configuration macro) checking for MCA component pls:bproc compile mode... dso checking sys/bproc.h usability... yes checking sys/bproc.h presence... yes checking for sys/bproc.h... yes checking for bproc_numnodes in -lbproc... yes checking for sys/bproc_common.h... yes checking if MCA component pls:bproc can compile... yes --- MCA component pls:bproc_orted (m4 configuration macro) checking for MCA component pls:bproc_orted compile mode... dso checking for sys/bproc.h... (cached) yes checking for bproc_numnodes in -lbproc... (cached) yes checking for sys/bproc_common.h... (cached) yes checking if MCA component pls:bproc_orted can compile... yes --- MCA component pls:fork (m4 configuration macro) checking for MCA component pls:fork compile mode... dso checking for fork... (cached) yes checking if MCA component pls:fork can compile... yes --- MCA component pls:poe (m4 configuration macro) checking for MCA component pls:poe compile mode... dso checking if on AIX... no checking if MCA component pls:poe can compile... no --- MCA component pls:rsh (m4 configuration macro) checking for MCA component pls:rsh compile mode... dso checking for fork... (cached) yes checking if MCA component pls:rsh can compile... yes --- MCA component pls:slurm (m4 configuration macro) checking for MCA component pls:slurm compile mode... dso checking for fork... (cached) yes checking for execve... (cached) yes checking for setpgid... yes checking if MCA component pls:slurm can compile... yes --- MCA component pls:tm (m4 configuration macro) checking for MCA component pls:tm compile mode... dso checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component pls:tm can compile... no --- MCA component pls:xgrid (m4 configuration macro) checking for MCA component pls:xgrid compile mode... dso checking for XGridFoundation Framework... no checking if MCA component pls:xgrid can compile... no +++ Configuring MCA framework ras checking for no configure components in framework ras... dash_host, hostfile, localhost checking for m4 configure components in framework ras... bjs, lsf_bproc, slurm, tm, xgrid --- MCA component ras:dash_host (no configuration) checking for MCA component ras:dash_host compile mode... dso checking if MCA component ras:dash_host can compile... yes --- MCA component ras:hostfile (no configuration) checking for MCA component ras:hostfile compile mode... dso checking if MCA component ras:hostfile can compile... yes --- MCA component ras:localhost (no configuration) checking for MCA component ras:localhost compile mode... dso checking if MCA component ras:localhost can compile... yes --- MCA component ras:bjs (m4 configuration macro) checking for MCA component ras:bjs compile mode... dso checking for sys/bproc.h... (cached) yes checking for bproc_numnodes in -lbproc... (cached) yes checking for sys/bproc_common.h... (cached) yes checking if MCA component ras:bjs can compile... yes --- MCA component ras:lsf_bproc (m4 configuration macro) checking for MCA component ras:lsf_bproc compile mode... dso checking for sys/bproc.h... (cached) yes checking for bproc_numnodes in -lbproc... (cached) yes checking for sys/bproc_common.h... (cached) yes checking if MCA component ras:lsf_bproc can compile... yes --- MCA component ras:slurm (m4 configuration macro) checking for MCA component ras:slurm compile mode... dso checking for fork... (cached) yes checking for execve... (cached) yes checking for setpgid... (cached) yes checking if MCA component ras:slurm can compile... yes --- MCA component ras:tm (m4 configuration macro) checking for MCA component ras:tm compile mode... dso checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component ras:tm can compile... no --- MCA component ras:xgrid (m4 configuration macro) checking for MCA component ras:xgrid compile mode... dso checking for XGridFoundation Framework... (cached) no checking if MCA component ras:xgrid can compile... no +++ Configuring MCA framework rds checking for no configure components in framework rds... hostfile, resfile checking for m4 configure components in framework rds... --- MCA component rds:hostfile (no configuration) checking for MCA component rds:hostfile compile mode... dso checking if MCA component rds:hostfile can compile... yes --- MCA component rds:resfile (no configuration) checking for MCA component rds:resfile compile mode... dso checking if MCA component rds:resfile can compile... yes +++ Configuring MCA framework rmaps checking for no configure components in framework rmaps... round_robin checking for m4 configure components in framework rmaps... --- MCA component rmaps:round_robin (no configuration) checking for MCA component rmaps:round_robin compile mode... dso checking if MCA component rmaps:round_robin can compile... yes +++ Configuring MCA framework rmgr checking for no configure components in framework rmgr... proxy, urm checking for m4 configure components in framework rmgr... --- MCA component rmgr:proxy (no configuration) checking for MCA component rmgr:proxy compile mode... dso checking if MCA component rmgr:proxy can compile... yes --- MCA component rmgr:urm (no configuration) checking for MCA component rmgr:urm compile mode... dso checking if MCA component rmgr:urm can compile... yes +++ Configuring MCA framework rml checking for no configure components in framework rml... oob checking for m4 configure components in framework rml... cnos --- MCA component rml:oob (no configuration) checking for MCA component rml:oob compile mode... dso checking if MCA component rml:oob can compile... yes --- MCA component rml:cnos (m4 configuration macro) checking for MCA component rml:cnos compile mode... dso checking for cnos_barrier... no checking if MCA component rml:cnos can compile... no +++ Configuring MCA framework schema checking for no configure components in framework schema... checking for m4 configure components in framework schema... +++ Configuring MCA framework sds checking for no configure components in framework sds... env, seed, singleton, slurm checking for m4 configure components in framework sds... bproc, cnos, pipe, portals_utcp --- MCA component sds:env (no configuration) checking for MCA component sds:env compile mode... dso checking if MCA component sds:env can compile... yes --- MCA component sds:seed (no configuration) checking for MCA component sds:seed compile mode... dso checking if MCA component sds:seed can compile... yes --- MCA component sds:singleton (no configuration) checking for MCA component sds:singleton compile mode... dso checking if MCA component sds:singleton can compile... yes --- MCA component sds:slurm (no configuration) checking for MCA component sds:slurm compile mode... dso checking if MCA component sds:slurm can compile... yes --- MCA component sds:bproc (m4 configuration macro) checking for MCA component sds:bproc compile mode... dso checking for sys/bproc.h... (cached) yes checking for bproc_numnodes in -lbproc... (cached) yes checking for sys/bproc_common.h... (cached) yes checking if MCA component sds:bproc can compile... yes --- MCA component sds:cnos (m4 configuration macro) checking for MCA component sds:cnos compile mode... dso checking for cnos_get_rank... no checking if MCA component sds:cnos can compile... no --- MCA component sds:pipe (m4 configuration macro) checking for MCA component sds:pipe compile mode... dso checking for pipe... (cached) yes checking if MCA component sds:pipe can compile... yes --- MCA component sds:portals_utcp (m4 configuration macro) checking for MCA component sds:portals_utcp compile mode... dso checking for PtlGetRank... no checking if MCA component sds:portals_utcp can compile... no +++ Configuring MCA framework soh checking for no configure components in framework soh... checking for m4 configure components in framework soh... bproc --- MCA component soh:bproc (m4 configuration macro) checking for MCA component soh:bproc compile mode... dso checking for sys/bproc.h... (cached) yes checking for bproc_numnodes in -lbproc... (cached) yes checking for sys/bproc_common.h... (cached) yes checking for BPROC_API_VERSION... yes checking if MCA component soh:bproc can compile... yes *** Configuring MCA for ompi checking for frameworks for ompi... allocator, bml, btl, coll, common, io, mpool, pml, ptl, rcache, topo +++ Configuring MCA framework allocator checking for no configure components in framework allocator... basic, bucket checking for m4 configure components in framework allocator... --- MCA component allocator:basic (no configuration) checking for MCA component allocator:basic compile mode... dso checking if MCA component allocator:basic can compile... yes --- MCA component allocator:bucket (no configuration) checking for MCA component allocator:bucket compile mode... dso checking if MCA component allocator:bucket can compile... yes +++ Configuring MCA framework bml checking for no configure components in framework bml... r2 checking for m4 configure components in framework bml... --- MCA component bml:r2 (no configuration) checking for MCA component bml:r2 compile mode... dso checking if MCA component bml:r2 can compile... yes +++ Configuring MCA framework btl checking for no configure components in framework btl... self, sm checking for m4 configure components in framework btl... gm, mvapi, mx, openib, portals, tcp --- MCA component btl:self (no configuration) checking for MCA component btl:self compile mode... dso checking if MCA component btl:self can compile... yes --- MCA component btl:sm (no configuration) checking for MCA component btl:sm compile mode... dso checking if MCA component btl:sm can compile... yes --- MCA component btl:gm (m4 configuration macro) checking for MCA component btl:gm compile mode... dso checking gm.h usability... yes checking gm.h presence... yes checking for gm.h... yes looking for library without search path checking for gm_init in -lgm... yes checking for GM_API_VERSION... yes checking for gm_put()... yes checking for gm_get()... yes checking for broken GM 2.x RDMA gets build... no checking if MCA component btl:gm can compile... yes --- MCA component btl:mvapi (m4 configuration macro) checking for MCA component btl:mvapi compile mode... dso checking vapi.h usability... no checking vapi.h presence... no checking for vapi.h... no checking vapi.h usability... no checking vapi.h presence... no checking for vapi.h... no checking if MCA component btl:mvapi can compile... no --- MCA component btl:mx (m4 configuration macro) checking for MCA component btl:mx compile mode... dso checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component btl:mx can compile... no --- MCA component btl:openib (m4 configuration macro) checking for MCA component btl:openib compile mode... dso checking for sysfs_open_class in -lsysfs... no checking for cm_timeout in -lcm... no checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking for ibv_create_srq... no checking for ibv_get_device_list... no checking if MCA component btl:openib can compile... no --- MCA component btl:portals (m4 configuration macro) checking for MCA component btl:portals compile mode... dso checking for Portals configuration... utcp checking portals3.h usability... no checking portals3.h presence... no checking for portals3.h... no checking if MCA component btl:portals can compile... no --- MCA component btl:tcp (m4 configuration macro) checking for MCA component btl:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component btl:tcp can compile... yes +++ Configuring MCA framework coll checking for no configure components in framework coll... basic, self, sm checking for m4 configure components in framework coll... --- MCA component coll:basic (no configuration) checking for MCA component coll:basic compile mode... dso checking if MCA component coll:basic can compile... yes --- MCA component coll:self (no configuration) checking for MCA component coll:self compile mode... dso checking if MCA component coll:self can compile... yes --- MCA component coll:sm (no configuration) checking for MCA component coll:sm compile mode... dso checking if MCA component coll:sm can compile... yes +++ Configuring MCA framework common checking for no configure components in framework common... sm checking for m4 configure components in framework common... --- MCA component common:sm (no configuration) checking for MCA component common:sm compile mode... dso checking if MCA component common:sm can compile... yes +++ Configuring MCA framework io checking for no configure components in framework io... checking for m4 configure components in framework io... romio --- MCA component io:romio (m4 configuration macro) checking for MCA component io:romio compile mode... dso checking if want ROMIO component... yes checking if MPI profiling is enabled... yes *** Configuring ROMIO distribution configure: OMPI configuring in ompi/mca/io/romio/romio configure: running /bin/sh './configure' CFLAGS="-O3 -DNDEBUG -m32 -fno-strict-aliasing -pthread" CPPFLAGS=" " FFLAGS="-m32" LDFLAGS="" --enable-shared --disable-static --prefix=/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b --with-mpi=open_mpi --cache-file=/dev/null --srcdir=. Configuring with args CFLAGS=-O3 -DNDEBUG -m32 -fno-strict-aliasing -pthread CPPFLAGS= FFLAGS=-m32 LDFLAGS= --enable-shared --disable-static --prefix=/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b --with-mpi=open_mpi --cache-file=/dev/null --srcdir=. checking for Open MPI support files... in Open MPI source tree -- good checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for architecture... LINUX configure: WARNING: Unknown architecture ... proceeding anyway ROMIO home directory is /net/scratch1/dog/openmpi/openmpi-1.0.2/ompi/mca/io/romio/romio checking for ranlib... ranlib checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for memalign... yes checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for int... yes checking size of int... 4 checking for void*... yes checking size of void*... 4 checking for int large enough for pointers... yes checking for long long... yes checking size of long long... 8 checking whether struct flock compatible with MPI_Offset... yes checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing pthread_create... none required checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... yes checking if sys/aio.h exists and can be compiled... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... yes checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... yes checking for aio_sigevent member of aiocb structure... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for restrict... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... (cached) ranlib checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_i386 checking if the linker (/usr/bin/ld -m elf_i386) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for : option to produce PIC... -fPIC checking if : PIC flag -fPIC works... no checking if : static flag -static works... no checking if : supports -c -o file.o... no checking whether the : linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate setting CC to gcc setting F77 to : setting TEST_CC to mpicc setting TEST_F77 to mpif77 setting CFLAGS to -O3 -DNDEBUG -m32 -fno-strict-aliasing -pthread -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating adio/Makefile config.status: creating adio/ad_gridftp/Makefile config.status: creating adio/ad_hfs/Makefile config.status: creating adio/ad_nfs/Makefile config.status: creating adio/ad_ntfs/Makefile config.status: creating adio/ad_panfs/Makefile config.status: creating adio/ad_pfs/Makefile config.status: creating adio/ad_piofs/Makefile config.status: creating adio/ad_pvfs/Makefile config.status: creating adio/ad_pvfs2/Makefile config.status: creating adio/ad_sfs/Makefile config.status: creating adio/ad_testfs/Makefile config.status: creating adio/ad_ufs/Makefile config.status: creating adio/ad_xfs/Makefile config.status: creating adio/common/Makefile config.status: creating adio/include/Makefile config.status: creating doc/Makefile config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating include/Makefile config.status: creating mpi-io/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating util/romioinstall config.status: creating mpi-io/glue/openmpi/Makefile config.status: creating util/Makefile config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing default-1 commands configure: /bin/sh './configure' succeeded for ompi/mca/io/romio/romio ROMIO distribution configured successfully checking if MCA component io:romio can compile... yes +++ Configuring MCA framework mpool checking for no configure components in framework mpool... sm checking for m4 configure components in framework mpool... gm, mvapi, openib --- MCA component mpool:sm (no configuration) checking for MCA component mpool:sm compile mode... dso checking if MCA component mpool:sm can compile... yes --- MCA component mpool:gm (m4 configuration macro) checking for MCA component mpool:gm compile mode... dso checking gm.h usability... yes checking gm.h presence... yes checking for gm.h... yes looking for library without search path checking for gm_init in -lgm... yes checking for GM_API_VERSION... yes checking for gm_put()... yes checking for gm_get()... yes checking for broken GM 2.x RDMA gets build... no checking if MCA component mpool:gm can compile... yes --- MCA component mpool:mvapi (m4 configuration macro) checking for MCA component mpool:mvapi compile mode... dso checking vapi.h usability... no checking vapi.h presence... no checking for vapi.h... no checking vapi.h usability... no checking vapi.h presence... no checking for vapi.h... no checking if MCA component mpool:mvapi can compile... no --- MCA component mpool:openib (m4 configuration macro) checking for MCA component mpool:openib compile mode... dso checking for sysfs_open_class in -lsysfs... (cached) no checking for cm_timeout in -lcm... (cached) no checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking for ibv_create_srq... (cached) no checking for ibv_get_device_list... (cached) no checking if MCA component mpool:openib can compile... no +++ Configuring MCA framework pml checking for no configure components in framework pml... ob1, teg checking for m4 configure components in framework pml... --- MCA component pml:ob1 (no configuration) checking for MCA component pml:ob1 compile mode... dso checking if MCA component pml:ob1 can compile... yes --- MCA component pml:teg (no configuration) checking for MCA component pml:teg compile mode... dso checking if MCA component pml:teg can compile... yes +++ Configuring MCA framework ptl checking for no configure components in framework ptl... self, sm checking for m4 configure components in framework ptl... gm, mx, tcp --- MCA component ptl:self (no configuration) checking for MCA component ptl:self compile mode... dso checking if MCA component ptl:self can compile... yes --- MCA component ptl:sm (no configuration) checking for MCA component ptl:sm compile mode... dso checking if MCA component ptl:sm can compile... yes --- MCA component ptl:gm (m4 configuration macro) checking for MCA component ptl:gm compile mode... dso checking gm.h usability... yes checking gm.h presence... yes checking for gm.h... yes looking for library without search path checking for gm_init in -lgm... yes checking for GM_API_VERSION... yes checking for gm_put()... yes checking for gm_get()... yes checking for broken GM 2.x RDMA gets build... no checking if MCA component ptl:gm can compile... yes --- MCA component ptl:mx (m4 configuration macro) checking for MCA component ptl:mx compile mode... dso checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component ptl:mx can compile... no --- MCA component ptl:tcp (m4 configuration macro) checking for MCA component ptl:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component ptl:tcp can compile... yes +++ Configuring MCA framework rcache checking for no configure components in framework rcache... rb checking for m4 configure components in framework rcache... --- MCA component rcache:rb (no configuration) checking for MCA component rcache:rb compile mode... dso checking if MCA component rcache:rb can compile... yes +++ Configuring MCA framework topo checking for no configure components in framework topo... unity checking for m4 configure components in framework topo... --- MCA component topo:unity (no configuration) checking for MCA component topo:unity compile mode... dso checking if MCA component topo:unity can compile... yes ============================================================================ == Final top-level OMPI configuration ============================================================================ *** Libevent 3rd party event handler checking for ANSI C header files... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for poll.h... (cached) yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking for unistd.h... (cached) yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking for sys/time.h... (cached) yes checking for sys/queue.h... (cached) yes checking sys/event.h usability... no checking sys/event.h presence... no checking for sys/event.h... no checking for TAILQ_FOREACH in sys/queue.h... no checking for timeradd in sys/time.h... yes checking whether time.h and sys/time.h may both be included... yes checking for gettimeofday... yes checking for select... yes checking for poll... yes checking for epoll_ctl... yes checking for epoll_ctl on broken Linux distros... no checking for epoll system call... yes checking for err... yes checking for pid_t... (cached) yes checking for size_t... (cached) yes checking for u_int64_t... yes checking for u_int32_t... yes checking for u_int16_t... yes checking for u_int8_t... yes checking for socklen_t... yes *** Libtool configuration checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking how to recognise dependent libraries... pass_all checking for dlfcn.h... (cached) yes checking how to run the C++ preprocessor... g++ -E checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate *** GNU libltdl setup configure: OMPI configuring in opal/libltdl configure: running /bin/sh './configure' '--prefix=/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b' '--build=i686-pc-linux-gnu' '--with-bproc' '--with-gm' '--enable-io-romio' '--with-romio' '--with-io-romio-flags=--build=i686-pc-linux-gnu' 'CC=gcc' 'CFLAGS=-m32' 'CXXFLAGS=-m32' 'CXX=g++' 'F77=gfortran' 'FCFLAGS=-m32' 'FC=gfortran' 'FFLAGS=-m32' 'LDFLAGS=-L/usr/lib' 'build_alias=i686-pc-linux-gnu' --enable-ltdl-convenience --disable-ltdl-install --enable-shared --disable-static --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gcc... gcc configure: WARNING: In the future, Autoconf will not detect cross-tools whose name does not start with the host triplet. If you think this configuration is useful to you, please write to autoconf@gnu.org. checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for an ANSI C-conforming const... yes checking for inline... inline checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking which extension is used for loadable modules... .so checking which variable specifies run-time library path... LD_LIBRARY_PATH checking for the default library search path... /lib /usr/lib /usr/lib/octave-2.1.57 /usr/lib64/octave-2.1.57 /usr/lib/qt-3.3/lib /usr/lib64/qt-3.3/lib /usr/X11R6/lib /usr/X11R6/lib64 /usr/X11R6/lib /usr/X11R6/lib64 /usr/lib/mysql /usr/lib64/mysql checking for objdir... .libs checking whether libtool supports -dlopen/-dlpreopen... yes checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen in -ldl... yes checking for dlerror... yes checking for _ prefix in compiled symbols... no checking whether deplibs are loaded by dlopen... yes checking argz.h usability... yes checking argz.h presence... yes checking for argz.h... yes checking for error_t... yes checking for argz_append... yes checking for argz_create_sep... yes checking for argz_insert... yes checking for argz_next... yes checking for argz_stringify... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for memory.h... (cached) yes checking for stdlib.h... (cached) yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for unistd.h... (cached) yes checking dl.h usability... no checking dl.h presence... no checking for dl.h... no checking sys/dl.h usability... no checking sys/dl.h presence... no checking for sys/dl.h... no checking dld.h usability... no checking dld.h presence... no checking for dld.h... no checking mach-o/dyld.h usability... no checking mach-o/dyld.h presence... no checking for mach-o/dyld.h... no checking for string.h... (cached) yes checking for strchr... yes checking for strrchr... yes checking for memcpy... yes checking for memmove... yes checking for strcmp... yes checking for closedir... yes checking for opendir... yes checking for readdir... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands configure: /bin/sh './configure' succeeded for opal/libltdl checking for libtool-supplied linker flags... -Wl,--export-dynamic -lutil -lnsl -lm -ldl *** Compiler flags checking which of CFLAGS are ok for TotalView modules... -DNDEBUG -m32 -fno-strict-aliasing -pthread checking extra CFLAGS for TotalView modules... -g checking for libmpi additional LDFLAGS... checking for libmpi additional LIBS... *** Wrapper compiler flags checking for mpicc CFLAGS... -pthread checking for mpiCC CXXFLAGS... -pthread checking for mpif77/mpif90 FFLAGS... -pthread checking for mpif77/mpif90 FCFLAGS... -pthread checking for wrapper compiler LDFLAGS... checking for wrapper compiler LIBS... -lutil -lnsl -ldl -Wl,--export-dynamic -lutil -lnsl -lm -ldl *** Final output configure: creating ./config.status config.status: creating opal/mca/maffinity/Makefile config.status: creating opal/dynamic-mca/maffinity/Makefile config.status: creating opal/mca/maffinity/base/Makefile config.status: creating opal/mca/memory/Makefile config.status: creating opal/dynamic-mca/memory/Makefile config.status: creating opal/mca/memory/base/Makefile config.status: creating opal/mca/paffinity/Makefile config.status: creating opal/dynamic-mca/paffinity/Makefile config.status: creating opal/mca/paffinity/base/Makefile config.status: creating opal/mca/timer/Makefile config.status: creating opal/dynamic-mca/timer/Makefile config.status: creating opal/mca/timer/base/Makefile config.status: creating orte/mca/errmgr/Makefile config.status: creating orte/dynamic-mca/errmgr/Makefile config.status: creating orte/mca/errmgr/base/Makefile config.status: creating orte/mca/gpr/Makefile config.status: creating orte/dynamic-mca/gpr/Makefile config.status: creating orte/mca/gpr/base/Makefile config.status: creating orte/mca/iof/Makefile config.status: creating orte/dynamic-mca/iof/Makefile config.status: creating orte/mca/iof/base/Makefile config.status: creating orte/mca/ns/Makefile config.status: creating orte/dynamic-mca/ns/Makefile config.status: creating orte/mca/ns/base/Makefile config.status: creating orte/mca/oob/Makefile config.status: creating orte/dynamic-mca/oob/Makefile config.status: creating orte/mca/oob/base/Makefile config.status: creating orte/mca/pls/Makefile config.status: creating orte/dynamic-mca/pls/Makefile config.status: creating orte/mca/pls/base/Makefile config.status: creating orte/mca/ras/Makefile config.status: creating orte/dynamic-mca/ras/Makefile config.status: creating orte/mca/ras/base/Makefile config.status: creating orte/mca/rds/Makefile config.status: creating orte/dynamic-mca/rds/Makefile config.status: creating orte/mca/rds/base/Makefile config.status: creating orte/mca/rmaps/Makefile config.status: creating orte/dynamic-mca/rmaps/Makefile config.status: creating orte/mca/rmaps/base/Makefile config.status: creating orte/mca/rmgr/Makefile config.status: creating orte/dynamic-mca/rmgr/Makefile config.status: creating orte/mca/rmgr/base/Makefile config.status: creating orte/mca/rml/Makefile config.status: creating orte/dynamic-mca/rml/Makefile config.status: creating orte/mca/rml/base/Makefile config.status: creating orte/mca/schema/Makefile config.status: creating orte/dynamic-mca/schema/Makefile config.status: creating orte/mca/schema/base/Makefile config.status: creating orte/mca/sds/Makefile config.status: creating orte/dynamic-mca/sds/Makefile config.status: creating orte/mca/sds/base/Makefile config.status: creating orte/mca/soh/Makefile config.status: creating orte/dynamic-mca/soh/Makefile config.status: creating orte/mca/soh/base/Makefile config.status: creating ompi/mca/allocator/Makefile config.status: creating ompi/dynamic-mca/allocator/Makefile config.status: creating ompi/mca/allocator/base/Makefile config.status: creating ompi/mca/bml/Makefile config.status: creating ompi/dynamic-mca/bml/Makefile config.status: creating ompi/mca/bml/base/Makefile config.status: creating ompi/mca/btl/Makefile config.status: creating ompi/dynamic-mca/btl/Makefile config.status: creating ompi/mca/btl/base/Makefile config.status: creating ompi/mca/coll/Makefile config.status: creating ompi/dynamic-mca/coll/Makefile config.status: creating ompi/mca/coll/base/Makefile config.status: creating ompi/mca/common/Makefile config.status: creating ompi/dynamic-mca/common/Makefile config.status: creating ompi/mca/io/Makefile config.status: creating ompi/dynamic-mca/io/Makefile config.status: creating ompi/mca/io/base/Makefile config.status: creating ompi/mca/mpool/Makefile config.status: creating ompi/dynamic-mca/mpool/Makefile config.status: creating ompi/mca/mpool/base/Makefile config.status: creating ompi/mca/pml/Makefile config.status: creating ompi/dynamic-mca/pml/Makefile config.status: creating ompi/mca/pml/base/Makefile config.status: creating ompi/mca/ptl/Makefile config.status: creating ompi/dynamic-mca/ptl/Makefile config.status: creating ompi/mca/ptl/base/Makefile config.status: creating ompi/mca/rcache/Makefile config.status: creating ompi/dynamic-mca/rcache/Makefile config.status: creating ompi/mca/rcache/base/Makefile config.status: creating ompi/mca/topo/Makefile config.status: creating ompi/dynamic-mca/topo/Makefile config.status: creating ompi/mca/topo/base/Makefile config.status: creating ompi/mca/pml/pml_direct_call.h.template config.status: creating opal/mca/maffinity/first_use/Makefile config.status: creating opal/mca/maffinity/libnuma/Makefile config.status: creating opal/mca/memory/darwin/Makefile config.status: creating opal/mca/memory/malloc_hooks/Makefile config.status: creating opal/mca/memory/malloc_interpose/Makefile config.status: creating opal/mca/memory/ptmalloc2/Makefile config.status: creating opal/mca/paffinity/linux/Makefile config.status: creating opal/mca/paffinity/solaris/Makefile config.status: creating opal/mca/timer/aix/Makefile config.status: creating opal/mca/timer/altix/Makefile config.status: creating opal/mca/timer/darwin/Makefile config.status: creating opal/mca/timer/linux/Makefile config.status: creating opal/mca/timer/solaris/Makefile config.status: creating orte/mca/gpr/null/Makefile config.status: creating orte/mca/gpr/proxy/Makefile config.status: creating orte/mca/gpr/replica/Makefile config.status: creating orte/mca/gpr/replica/api_layer/Makefile config.status: creating orte/mca/gpr/replica/transition_layer/Makefile config.status: creating orte/mca/gpr/replica/functional_layer/Makefile config.status: creating orte/mca/gpr/replica/communications/Makefile config.status: creating orte/mca/iof/proxy/Makefile config.status: creating orte/mca/iof/svc/Makefile config.status: creating orte/mca/ns/proxy/Makefile config.status: creating orte/mca/ns/replica/Makefile config.status: creating orte/mca/oob/tcp/Makefile config.status: creating orte/mca/pls/bproc/Makefile config.status: creating orte/mca/pls/bproc_orted/Makefile config.status: creating orte/mca/pls/daemon/Makefile config.status: creating orte/mca/pls/fork/Makefile config.status: creating orte/mca/pls/poe/Makefile config.status: creating orte/mca/pls/proxy/Makefile config.status: creating orte/mca/pls/rsh/Makefile config.status: creating orte/mca/pls/slurm/Makefile config.status: creating orte/mca/pls/tm/Makefile config.status: creating orte/mca/pls/xgrid/Makefile config.status: creating orte/mca/ras/bjs/Makefile config.status: creating orte/mca/ras/dash_host/Makefile config.status: creating orte/mca/ras/hostfile/Makefile config.status: creating orte/mca/ras/localhost/Makefile config.status: creating orte/mca/ras/lsf_bproc/Makefile config.status: creating orte/mca/ras/slurm/Makefile config.status: creating orte/mca/ras/tm/Makefile config.status: creating orte/mca/ras/xgrid/Makefile config.status: creating orte/mca/rds/hostfile/Makefile config.status: creating orte/mca/rds/resfile/Makefile config.status: creating orte/mca/rmaps/round_robin/Makefile config.status: creating orte/mca/rmgr/proxy/Makefile config.status: creating orte/mca/rmgr/urm/Makefile config.status: creating orte/mca/rml/cnos/Makefile config.status: creating orte/mca/rml/oob/Makefile config.status: creating orte/mca/sds/bproc/Makefile config.status: creating orte/mca/sds/cnos/Makefile config.status: creating orte/mca/sds/env/Makefile config.status: creating orte/mca/sds/pipe/Makefile config.status: creating orte/mca/sds/portals_utcp/Makefile config.status: creating orte/mca/sds/seed/Makefile config.status: creating orte/mca/sds/singleton/Makefile config.status: creating orte/mca/sds/slurm/Makefile config.status: creating orte/mca/soh/bproc/Makefile config.status: creating ompi/mca/allocator/basic/Makefile config.status: creating ompi/mca/allocator/bucket/Makefile config.status: creating ompi/mca/bml/r2/Makefile config.status: creating ompi/mca/btl/gm/Makefile config.status: creating ompi/mca/btl/mvapi/Makefile config.status: creating ompi/mca/btl/mx/Makefile config.status: creating ompi/mca/btl/openib/Makefile config.status: creating ompi/mca/btl/portals/Makefile config.status: creating ompi/mca/btl/self/Makefile config.status: creating ompi/mca/btl/sm/Makefile config.status: creating ompi/mca/btl/tcp/Makefile config.status: creating ompi/mca/coll/basic/Makefile config.status: creating ompi/mca/coll/self/Makefile config.status: creating ompi/mca/coll/sm/Makefile config.status: creating ompi/mca/common/sm/Makefile config.status: creating ompi/mca/io/romio/Makefile config.status: creating ompi/mca/mpool/gm/Makefile config.status: creating ompi/mca/mpool/mvapi/Makefile config.status: creating ompi/mca/mpool/openib/Makefile config.status: creating ompi/mca/mpool/sm/Makefile config.status: creating ompi/mca/pml/ob1/Makefile config.status: creating ompi/mca/pml/teg/Makefile config.status: creating ompi/mca/ptl/gm/Makefile config.status: creating ompi/mca/ptl/mx/Makefile config.status: creating ompi/mca/ptl/self/Makefile config.status: creating ompi/mca/ptl/sm/Makefile config.status: creating ompi/mca/ptl/tcp/Makefile config.status: creating ompi/mca/rcache/rb/Makefile config.status: creating ompi/mca/topo/unity/Makefile config.status: creating Makefile config.status: creating config/Makefile config.status: creating include/Makefile config.status: creating include/mpif.h config.status: creating etc/Makefile config.status: creating contrib/Makefile config.status: creating opal/Makefile config.status: creating opal/include/Makefile config.status: creating opal/include/sys/Makefile config.status: creating opal/include/sys/alpha/Makefile config.status: creating opal/include/sys/amd64/Makefile config.status: creating opal/include/sys/ia32/Makefile config.status: creating opal/include/sys/ia64/Makefile config.status: creating opal/include/sys/mips/Makefile config.status: creating opal/include/sys/powerpc/Makefile config.status: creating opal/include/sys/sparc/Makefile config.status: creating opal/include/sys/sparcv9/Makefile config.status: creating opal/include/sys/win32/Makefile config.status: creating opal/asm/Makefile config.status: creating opal/class/Makefile config.status: creating opal/event/Makefile config.status: creating opal/event/compat/Makefile config.status: creating opal/event/compat/sys/Makefile config.status: creating opal/memoryhooks/Makefile config.status: creating opal/runtime/Makefile config.status: creating opal/threads/Makefile config.status: creating opal/util/Makefile config.status: creating opal/mca/Makefile config.status: creating opal/dynamic-mca/Makefile config.status: creating opal/mca/base/Makefile config.status: creating orte/Makefile config.status: creating orte/include/Makefile config.status: creating orte/class/Makefile config.status: creating orte/dps/Makefile config.status: creating orte/runtime/Makefile config.status: creating orte/util/Makefile config.status: creating orte/tools/Makefile config.status: creating orte/tools/orted/Makefile config.status: creating orte/tools/orteprobe/Makefile config.status: creating orte/tools/orterun/Makefile config.status: creating orte/mca/Makefile config.status: creating orte/dynamic-mca/Makefile config.status: creating ompi/Makefile config.status: creating ompi/include/Makefile config.status: creating ompi/class/Makefile config.status: creating ompi/attribute/Makefile config.status: creating ompi/communicator/Makefile config.status: creating ompi/datatype/Makefile config.status: creating ompi/debuggers/Makefile config.status: creating ompi/errhandler/Makefile config.status: creating ompi/file/Makefile config.status: creating ompi/group/Makefile config.status: creating ompi/info/Makefile config.status: creating ompi/op/Makefile config.status: creating ompi/proc/Makefile config.status: creating ompi/request/Makefile config.status: creating ompi/runtime/Makefile config.status: creating ompi/win/Makefile config.status: creating ompi/mpi/Makefile config.status: creating ompi/mpi/c/Makefile config.status: creating ompi/mpi/c/profile/Makefile config.status: creating ompi/mpi/cxx/Makefile config.status: creating ompi/mpi/f77/Makefile config.status: creating ompi/mpi/f77/profile/Makefile config.status: creating ompi/mpi/f90/Makefile config.status: creating ompi/mpi/f90/fortran_kinds.sh config.status: creating ompi/mpi/f90/fortran_sizes.h config.status: creating ompi/mpi/f90/scripts/Makefile config.status: creating ompi/tools/Makefile config.status: creating ompi/tools/ompi_info/Makefile config.status: creating ompi/tools/wrappers/Makefile config.status: creating ompi/mca/Makefile config.status: creating ompi/dynamic-mca/Makefile config.status: creating test/Makefile config.status: creating test/asm/Makefile config.status: creating test/class/Makefile config.status: creating test/dps/Makefile config.status: creating test/mca/Makefile config.status: creating test/mca/gpr/Makefile config.status: creating test/mca/ns/Makefile config.status: creating test/mca/oob/Makefile config.status: creating test/mca/ras/Makefile config.status: creating test/mca/rds/Makefile config.status: creating test/mca/rmaps/Makefile config.status: creating test/mca/schema/Makefile config.status: creating test/memory/Makefile config.status: creating test/runtime/Makefile config.status: creating test/support/Makefile config.status: creating test/threads/Makefile config.status: creating test/util/Makefile config.status: creating include/ompi_config.h config.status: creating include/mpi.h config.status: linking ./opal/mca/timer/linux/timer_linux.h to opal/mca/timer/base/base_impl.h config.status: linking ./ompi/mca/btl/portals/btl_portals_compat_utcp.c to ompi/mca/btl/portals/btl_portals_compat.c config.status: executing depfiles commands config.status: executing pml-direct commands config.status: creating ompi/mca/pml/pml_direct_call.h checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes ============================================================================ == Configuring Open MPI ============================================================================ *** Checking versions checking Open MPI version... 1.0.2 checking Open MPI Subversion repository version... r9571 checking Open Run-Time Environment (ORTE) version... 1.0.2 checking ORTE Subversion repository version... r9571 checking Open Portable Access Layer (OPAL) version... 1.0.2 checking OPAL Subversion repository version... r9571 *** Initialization, setup configure: builddir: /net/scratch1/dog/openmpi/openmpi-1.0.2 configure: srcdir: /net/scratch1/dog/openmpi/openmpi-1.0.2 checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu installing to directory "/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b" *** Configuration options checking Whether to run code coverage... no checking whether to debug memory usage... no checking whether to profile memory usage... no checking if want developer-level compiler pickyness... no checking if want developer-level debugging code... no checking if want Fortran 77 bindings... yes checking if want Fortran 90 bindings... yes checking whether to enable PMPI... yes checking if want C++ bindings... yes checking if want to enable weak symbol support... yes checking if want run-time MPI parameter checking... runtime checking if want to install OMPI header files... no checking if want pretty-print stacktrace... yes checking if want deprecated executable names... no checking if want MPI-2 one-sided empty shell functions... no checking max supported array dimension in F90 MPI bindings... 4 checking if pty support should be enabled... yes checking if user wants dlopen support... yes checking if heterogeneous support should be enabled... yes checking if want trace file debugging... no ============================================================================ == Compiler and preprocessor tests ============================================================================ *** C compiler and preprocessor checking for style of include used by make... GNU checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking if compiler impersonates gcc... no checking if gcc supports -finline-functions... yes checking if gcc supports -fno-strict-aliasing... yes configure: WARNING: -fno-strict-aliasing has been added to CFLAGS checking for C optimization flags... -O3 -DNDEBUG -m32 -fno-strict-aliasing checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for long long... yes checking for long double... yes checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking for mode_t... yes checking for char... yes checking size of char... 1 checking for short... yes checking size of short... 2 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 4 checking for long long... (cached) yes checking size of long long... 8 checking for long double... (cached) yes checking size of long double... 12 checking for float... yes checking size of float... 4 checking for double... yes checking size of double... 8 checking for void *... yes checking size of void *... 4 checking for size_t... yes checking size of size_t... 4 checking alignment of char... 1 checking alignment of short... 2 checking alignment of wchar_t... 4 checking alignment of int... 4 checking alignment of long... 4 checking alignment of long long... 4 checking alignment of float... 4 checking alignment of double... 4 checking alignment of long double... 4 checking alignment of void *... 4 checking for C bool type... no checking for inline... __inline__ checking for C/C++ restrict keyword... __restrict checking for weak symbol support... yes *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking if compiler impersonates g++... no checking if g++ supports -finline-functions... yes configure: WARNING: -finline-functions has been added to CXXFLAGS checking if want C++ exception handling... no checking for C++ template_repository_directory... not used checking for C++ compiler template parameters... none needed checking for C++ optimization flags... -O3 -DNDEBUG -m32 -finline-functions checking for bool... yes checking size of bool... 1 checking alignment of bool... 1 *** Assembler checking directive for setting text section... .text checking directive for exporting symbols... .globl checking suffix for labels... : checking prefix for global symbol labels... checking for BSD-compatible nm... /usr/bin/nm -B checking prefix for lsym labels... .L checking prefix for function in .type... @ checking if .size is needed... yes checking if .align directive takes logarithmic value... no checking for objdump... objdump checking if .note.GNU-stack is needed... yes checking for fgrep... grep -F checking whether to enable smp locks... yes checking if gcc supports GCC inline assembly... yes checking if gcc supports DEC inline assembly... no checking if gcc supports XLC inline assembly... no checking if g++ supports GCC inline assembly... yes checking if g++ supports DEC inline assembly... no checking if g++ supports XLC inline assembly... no checking for assembly format... default-.text-.globl-:--.L-@-1-0-1-1-1 checking for asssembly architecture... IA32 checking for perl... perl checking for pre-built assembly file... yes (atomic-ia32-linux.s) checking for atomic assembly filename... atomic-ia32-linux.s *** Fortran 77 compiler checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking gfortran external symbol convention... double underscore checking if FORTRAN compiler supports LOGICAL... yes checking size of FORTRAN LOGICAL... 4 checking for C type corresponding to Fortran LOGICAL... int checking alignment of FORTRAN LOGICAL... 4 checking if FORTRAN compiler supports INTEGER... yes checking size of FORTRAN INTEGER... 4 checking for C type corresponding to Fortran INTEGER... int checking alignment of FORTRAN INTEGER... 4 checking if FORTRAN compiler supports INTEGER*1... yes checking size of FORTRAN INTEGER*1... 1 checking for C type corresponding to Fortran INTEGER*1... char checking alignment of FORTRAN INTEGER*1... 1 checking if FORTRAN compiler supports INTEGER*2... yes checking size of FORTRAN INTEGER*2... 2 checking for C type corresponding to Fortran INTEGER*2... short checking alignment of FORTRAN INTEGER*2... 2 checking if FORTRAN compiler supports INTEGER*4... yes checking size of FORTRAN INTEGER*4... 4 checking for C type corresponding to Fortran INTEGER*4... int checking alignment of FORTRAN INTEGER*4... 4 checking if FORTRAN compiler supports INTEGER*8... yes checking size of FORTRAN INTEGER*8... 8 checking for C type corresponding to Fortran INTEGER*8... long long checking alignment of FORTRAN INTEGER*8... 8 checking if FORTRAN compiler supports INTEGER*16... no checking if FORTRAN compiler supports REAL... yes checking size of FORTRAN REAL... 4 checking for C type corresponding to Fortran REAL... float checking alignment of FORTRAN REAL... 4 checking if FORTRAN compiler supports REAL*4... yes checking size of FORTRAN REAL*4... 4 checking for C type corresponding to Fortran REAL*4... float checking alignment of FORTRAN REAL*4... 4 checking if FORTRAN compiler supports REAL*8... yes checking size of FORTRAN REAL*8... 8 checking for C type corresponding to Fortran REAL*8... double checking alignment of FORTRAN REAL*8... 8 checking if FORTRAN compiler supports REAL*16... no checking if FORTRAN compiler supports DOUBLE PRECISION... yes checking size of FORTRAN DOUBLE PRECISION... 8 checking for C type corresponding to Fortran DOUBLE PRECISION... double checking alignment of FORTRAN DOUBLE PRECISION... 8 checking if FORTRAN compiler supports COMPLEX... yes checking size of FORTRAN COMPLEX... 8 checking alignment of FORTRAN COMPLEX... 4 checking if FORTRAN compiler supports COMPLEX*8... yes checking size of FORTRAN COMPLEX*8... 8 checking alignment of FORTRAN COMPLEX*8... 4 checking if FORTRAN compiler supports COMPLEX*16... yes checking size of FORTRAN COMPLEX*16... 16 checking alignment of FORTRAN COMPLEX*16... 8 checking if FORTRAN compiler supports COMPLEX*32... no checking for max fortran MPI handle index... ( 0x7fffffff < 2147483647 ? 0x7fffffff : 2147483647 ) checking FORTRAN value for .TRUE. logical type... 1 checking for correct handling of FORTRAN logical arrays... yes *** Fortran 90/95 compiler checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .f90 files... none checking whether gfortran and gfortran compilers are compatible... yes checking for FORTRAN compiler module include flag... -I checking if FORTRAN compiler supports integer(selected_int_kind(2))... yes checking size of FORTRAN integer(selected_int_kind(2))... 1 checking alignment of FORTRAN integer(selected_int_kind(2))... 1 checking size of FORTRAN logical(selected_int_kind(2))... 1 checking alignment of FORTRAN logical(selected_int_kind(2))... 1 checking if FORTRAN compiler supports integer(selected_int_kind(4))... yes checking size of FORTRAN integer(selected_int_kind(4))... 2 checking alignment of FORTRAN integer(selected_int_kind(4))... 2 checking size of FORTRAN logical(selected_int_kind(4))... 2 checking alignment of FORTRAN logical(selected_int_kind(4))... 2 checking if FORTRAN compiler supports integer(selected_int_kind(9))... yes checking size of FORTRAN integer(selected_int_kind(9))... 4 checking alignment of FORTRAN integer(selected_int_kind(9))... 4 checking size of FORTRAN logical(selected_int_kind(9))... 4 checking alignment of FORTRAN logical(selected_int_kind(9))... 4 checking if FORTRAN compiler supports integer(selected_int_kind(18))... yes checking size of FORTRAN integer(selected_int_kind(18))... 8 checking alignment of FORTRAN integer(selected_int_kind(18))... 4 checking size of FORTRAN logical(selected_int_kind(18))... 8 checking alignment of FORTRAN logical(selected_int_kind(18))... 4 checking if FORTRAN compiler supports integer(selected_int_kind(19))... no checking if FORTRAN compiler supports real(selected_real_kind(6))... yes checking size of FORTRAN real(selected_real_kind(6))... 4 checking size of FORTRAN complex(selected_real_kind(6))... 8 checking alignment of FORTRAN real(selected_real_kind(6))... 4 checking alignment of FORTRAN complex(selected_real_kind(6))... 4 checking precision of FORTRAN real(selected_real_kind(6))... 6 checking precision of FORTRAN complex(selected_real_kind(6))... 6 checking range of FORTRAN real(selected_real_kind(6))... 37 checking range of FORTRAN complex(selected_real_kind(6))... 37 checking if FORTRAN compiler supports real(selected_real_kind(15))... yes checking size of FORTRAN real(selected_real_kind(15))... 8 checking size of FORTRAN complex(selected_real_kind(15))... 16 checking alignment of FORTRAN real(selected_real_kind(15))... 4 checking alignment of FORTRAN complex(selected_real_kind(15))... 4 checking precision of FORTRAN real(selected_real_kind(15))... 15 checking precision of FORTRAN complex(selected_real_kind(15))... 15 checking range of FORTRAN real(selected_real_kind(15))... 307 checking range of FORTRAN complex(selected_real_kind(15))... 307 checking if FORTRAN compiler supports real(selected_real_kind(31))... no checking size of FORTRAN logical... 4 checking alignment of FORTRAN logical... 4 checking size of FORTRAN integer... 4 checking alignment of FORTRAN integer... 4 checking size of FORTRAN real... 4 checking alignment of FORTRAN real... 4 checking size of FORTRAN real(kind(1.D0))... 8 checking alignment of FORTRAN real(kind(1.D0))... 4 checking size of FORTRAN complex... 8 checking alignment of FORTRAN complex... 4 checking size of FORTRAN complex(kind(1.D0))... 16 checking alignment of FORTRAN complex(kind(1.D0))... 4 checking kind for FORTRAN selected_int_kind(18)... 8 checking kind for FORTRAN selected_int_kind(9)... 4 ============================================================================ == Header file tests ============================================================================ checking alloca.h usability... yes checking alloca.h presence... yes checking for alloca.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking for inttypes.h... (cached) yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking libutil.h usability... no checking libutil.h presence... no checking for libutil.h... no checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking pty.h usability... yes checking pty.h presence... yes checking for pty.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stropts.h usability... yes checking stropts.h presence... yes checking for stropts.h... yes checking sys/fcntl.h usability... yes checking sys/fcntl.h presence... yes checking for sys/fcntl.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/queue.h usability... yes checking sys/queue.h presence... yes checking for sys/queue.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/stat.h... (cached) yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/tree.h usability... no checking sys/tree.h presence... no checking for sys/tree.h... no checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking ulimit.h usability... yes checking ulimit.h presence... yes checking for ulimit.h... yes checking for unistd.h... (cached) yes checking util.h usability... no checking util.h presence... no checking for util.h... no checking utmp.h usability... yes checking utmp.h presence... yes checking for utmp.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for net/if.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking if works... yes ============================================================================ == Type tests ============================================================================ checking for pid_t... yes checking size of pid_t... 4 checking for socklen_t... yes checking for struct sockaddr_in... yes checking if SA_RESTART defined in signal.h... yes checking for sa_len in struct sockaddr... no checking for struct dirent.d_type... yes checking for siginfo_t.si_fd... yes ============================================================================ == Library and Function tests ============================================================================ checking for openpty in -lutil... yes checking for gethostbyname in -lnsl... yes checking for socket in -lsocket... no checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for openpty... yes checking for isatty... yes checking for htonl... yes checking for ntohl... yes checking for htons... yes checking for ntohs... yes checking for getpwuid... yes checking for fork... yes checking for waitpid... yes checking for execve... yes checking for pipe... yes checking for setsid... yes checking for mmap... yes checking if we need -lexecinfo for backtrace... no checking for backtrace... yes checking if we need -lgen for dirname... no checking for dirname... yes checking if we need -lm for ceil... yes checking for ceil... yes checking for asprintf... (cached) yes checking for snprintf... (cached) yes checking for vasprintf... (cached) yes checking for vsnprintf... (cached) yes checking for openpty... (cached) yes checking for isatty... (cached) yes checking for htonl... (cached) yes checking for ntohl... (cached) yes checking for htons... (cached) yes checking for ntohs... (cached) yes checking for getpwuid... (cached) yes checking for fork... (cached) yes checking for waitpid... (cached) yes checking for execve... (cached) yes checking for pipe... (cached) yes checking for ptsname... yes checking for setsid... (cached) yes checking for mmap... (cached) yes checking for mallopt... yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking whether __func__ is declared... yes checking if we need -lrt for sched_yield... no checking for sched_yield... yes checking if we need -lexecinfo for backtrace... (cached) no checking for backtrace... (cached) yes checking if we need -lgen for dirname... (cached) no checking for dirname... (cached) yes checking for ceil in -lm... yes ============================================================================ == System-specific tests ============================================================================ checking checking for type of MPI_Offset... long long checking checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG checking whether byte ordering is bigendian... no checking for broken qsort... no checking if C compiler and POSIX threads work as is... no checking if C++ compiler and POSIX threads work as is... no checking if F77 compiler and POSIX threads work as is... no checking if C compiler and POSIX threads work with -Kthread... no checking if C compiler and POSIX threads work with -kthread... no checking if C compiler and POSIX threads work with -pthread... yes checking if C++ compiler and POSIX threads work with -Kthread... no checking if C++ compiler and POSIX threads work with -kthread... no checking if C++ compiler and POSIX threads work with -pthread... yes checking if F77 compiler and POSIX threads work with -Kthread... no checking if F77 compiler and POSIX threads work with -kthread... no checking if F77 compiler and POSIX threads work with -pthread... yes checking for working POSIX threads package... yes checking if C compiler and Solaris threads work... no checking if C++ compiler and Solaris threads work... no checking if F77 compiler and Solaris threads work... no checking for working Solaris threads package... no checking for type of thread support... posix checking if threads have different pids (pthreads on linux)... yes checking if want MPI thread support... no checking if want asynchronous progress thread support... no checking whether ln -s works... yes checking for flex... flex checking for yywrap in -lfl... no checking for yywrap in -ll... no checking lex output file root... lex.yy checking whether yytext is a pointer... no checking if build filesystem is case sensitive... yes checking if configuring for case sensitive filesystem... yes ============================================================================ == Modular Component Architecture (MCA) setup ============================================================================ checking for subdir args... '--prefix=/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b' '--build=i686-pc-linux-gnu' '--with-bproc' '--with-gm' '--enable-io-romio' '--with-romio' '--with-io-romio-flags=--build=i686-pc-linux-gnu' 'CC=gcc' 'CFLAGS=-m32' 'CXXFLAGS=-m32' 'CXX=g++' 'F77=gfortran' 'FCFLAGS=-m32' 'FC=gfortran' 'FFLAGS=-m32' 'LDFLAGS=-L/usr/lib' 'build_alias=i686-pc-linux-gnu' checking for gcc... gcc checking dependency style of gcc... gcc3 checking which components should be disabled... checking which components should be direct-linked into the library... checking which components should be run-time loadable... all checking which components should be static... none checking for projects containing MCA frameworks... opal, orte, ompi *** Configuring MCA for opal checking for frameworks for opal... maffinity, memory, paffinity, timer +++ Configuring MCA framework maffinity checking for no configure components in framework maffinity... first_use checking for m4 configure components in framework maffinity... libnuma --- MCA component maffinity:first_use (no configuration) checking for MCA component maffinity:first_use compile mode... dso checking if MCA component maffinity:first_use can compile... yes --- MCA component maffinity:libnuma (m4 configuration macro) checking for MCA component maffinity:libnuma compile mode... dso checking numa.h usability... yes checking numa.h presence... yes checking for numa.h... yes looking for library without search path checking for numa_available in -lnuma... no checking if MCA component maffinity:libnuma can compile... no +++ Configuring MCA framework memory checking for no configure components in framework memory... checking for m4 configure components in framework memory... darwin, malloc_hooks, ptmalloc2, malloc_interpose --- MCA component memory:darwin (m4 configuration macro) checking for MCA component memory:darwin compile mode... static checking malloc/malloc.h usability... no checking malloc/malloc.h presence... no checking for malloc/malloc.h... no checking if MCA component memory:darwin can compile... no --- MCA component memory:malloc_hooks (m4 configuration macro) checking for MCA component memory:malloc_hooks compile mode... static checking for malloc.h... (cached) yes checking whether __malloc_initialize_hook is declared... yes checking for malloc_usable_size... yes checking for dlsym in -ldl... yes checking if MCA component memory:malloc_hooks can compile... yes --- MCA component memory:ptmalloc2 (m4 configuration macro) checking for MCA component memory:ptmalloc2 compile mode... static checking if MCA component memory:ptmalloc2 can compile... no --- MCA component memory:malloc_interpose (m4 configuration macro) checking for MCA component memory:malloc_interpose compile mode... static checking if MCA component memory:malloc_interpose can compile... no +++ Configuring MCA framework paffinity checking for no configure components in framework paffinity... checking for m4 configure components in framework paffinity... linux, solaris --- MCA component paffinity:linux (m4 configuration macro) checking for MCA component paffinity:linux compile mode... dso checking for sched_setaffinity... yes checking for cpu_set_t... yes checking whether CPU_ZERO is broken... no checking how many parameters sched_setaffinity() takes... 3 checking if MCA component paffinity:linux can compile... yes --- MCA component paffinity:solaris (m4 configuration macro) checking for MCA component paffinity:solaris compile mode... dso checking for processor_bind... no checking if MCA component paffinity:solaris can compile... no +++ Configuring MCA framework timer checking for no configure components in framework timer... checking for m4 configure components in framework timer... aix, altix, darwin, solaris, linux --- MCA component timer:aix (m4 configuration macro) checking for MCA component timer:aix compile mode... static checking for time_base_to_time... no checking if MCA component timer:aix can compile... no --- MCA component timer:altix (m4 configuration macro) checking for MCA component timer:altix compile mode... static checking sn/mmtimer.h usability... no checking sn/mmtimer.h presence... no checking for sn/mmtimer.h... no checking if MCA component timer:altix can compile... no --- MCA component timer:darwin (m4 configuration macro) checking for MCA component timer:darwin compile mode... static checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for mach_absolute_time... no checking if MCA component timer:darwin can compile... no --- MCA component timer:solaris (m4 configuration macro) checking for MCA component timer:solaris compile mode... static checking for gethrtime... no checking if MCA component timer:solaris can compile... no --- MCA component timer:linux (m4 configuration macro) checking for MCA component timer:linux compile mode... static checking if MCA component timer:linux can compile... yes *** Configuring MCA for orte checking for frameworks for orte... errmgr, gpr, iof, ns, oob, pls, ras, rds, rmaps, rmgr, rml, schema, sds, soh +++ Configuring MCA framework errmgr checking for no configure components in framework errmgr... checking for m4 configure components in framework errmgr... +++ Configuring MCA framework gpr checking for no configure components in framework gpr... null, proxy, replica checking for m4 configure components in framework gpr... --- MCA component gpr:null (no configuration) checking for MCA component gpr:null compile mode... dso checking if MCA component gpr:null can compile... yes --- MCA component gpr:proxy (no configuration) checking for MCA component gpr:proxy compile mode... dso checking if MCA component gpr:proxy can compile... yes --- MCA component gpr:replica (no configuration) checking for MCA component gpr:replica compile mode... dso checking if MCA component gpr:replica can compile... yes +++ Configuring MCA framework iof checking for no configure components in framework iof... proxy, svc checking for m4 configure components in framework iof... --- MCA component iof:proxy (no configuration) checking for MCA component iof:proxy compile mode... dso checking if MCA component iof:proxy can compile... yes --- MCA component iof:svc (no configuration) checking for MCA component iof:svc compile mode... dso checking if MCA component iof:svc can compile... yes +++ Configuring MCA framework ns checking for no configure components in framework ns... proxy, replica checking for m4 configure components in framework ns... --- MCA component ns:proxy (no configuration) checking for MCA component ns:proxy compile mode... dso checking if MCA component ns:proxy can compile... yes --- MCA component ns:replica (no configuration) checking for MCA component ns:replica compile mode... dso checking if MCA component ns:replica can compile... yes +++ Configuring MCA framework oob checking for no configure components in framework oob... checking for m4 configure components in framework oob... tcp --- MCA component oob:tcp (m4 configuration macro) checking for MCA component oob:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component oob:tcp can compile... yes +++ Configuring MCA framework pls checking for no configure components in framework pls... daemon, proxy checking for m4 configure components in framework pls... bproc, bproc_orted, fork, poe, rsh, slurm, tm, xgrid --- MCA component pls:daemon (no configuration) checking for MCA component pls:daemon compile mode... dso checking if MCA component pls:daemon can compile... yes --- MCA component pls:proxy (no configuration) checking for MCA component pls:proxy compile mode... dso checking if MCA component pls:proxy can compile... yes --- MCA component pls:bproc (m4 configuration macro) checking for MCA component pls:bproc compile mode... dso checking sys/bproc.h usability... yes checking sys/bproc.h presence... yes checking for sys/bproc.h... yes checking for bproc_numnodes in -lbproc... yes checking for sys/bproc_common.h... yes checking if MCA component pls:bproc can compile... yes --- MCA component pls:bproc_orted (m4 configuration macro) checking for MCA component pls:bproc_orted compile mode... dso checking for sys/bproc.h... (cached) yes checking for bproc_numnodes in -lbproc... (cached) yes checking for sys/bproc_common.h... (cached) yes checking if MCA component pls:bproc_orted can compile... yes --- MCA component pls:fork (m4 configuration macro) checking for MCA component pls:fork compile mode... dso checking for fork... (cached) yes checking if MCA component pls:fork can compile... yes --- MCA component pls:poe (m4 configuration macro) checking for MCA component pls:poe compile mode... dso checking if on AIX... no checking if MCA component pls:poe can compile... no --- MCA component pls:rsh (m4 configuration macro) checking for MCA component pls:rsh compile mode... dso checking for fork... (cached) yes checking if MCA component pls:rsh can compile... yes --- MCA component pls:slurm (m4 configuration macro) checking for MCA component pls:slurm compile mode... dso checking for fork... (cached) yes checking for execve... (cached) yes checking for setpgid... yes checking if MCA component pls:slurm can compile... yes --- MCA component pls:tm (m4 configuration macro) checking for MCA component pls:tm compile mode... dso checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component pls:tm can compile... no --- MCA component pls:xgrid (m4 configuration macro) checking for MCA component pls:xgrid compile mode... dso checking for XGridFoundation Framework... no checking if MCA component pls:xgrid can compile... no +++ Configuring MCA framework ras checking for no configure components in framework ras... dash_host, hostfile, localhost checking for m4 configure components in framework ras... bjs, lsf_bproc, slurm, tm, xgrid --- MCA component ras:dash_host (no configuration) checking for MCA component ras:dash_host compile mode... dso checking if MCA component ras:dash_host can compile... yes --- MCA component ras:hostfile (no configuration) checking for MCA component ras:hostfile compile mode... dso checking if MCA component ras:hostfile can compile... yes --- MCA component ras:localhost (no configuration) checking for MCA component ras:localhost compile mode... dso checking if MCA component ras:localhost can compile... yes --- MCA component ras:bjs (m4 configuration macro) checking for MCA component ras:bjs compile mode... dso checking for sys/bproc.h... (cached) yes checking for bproc_numnodes in -lbproc... (cached) yes checking for sys/bproc_common.h... (cached) yes checking if MCA component ras:bjs can compile... yes --- MCA component ras:lsf_bproc (m4 configuration macro) checking for MCA component ras:lsf_bproc compile mode... dso checking for sys/bproc.h... (cached) yes checking for bproc_numnodes in -lbproc... (cached) yes checking for sys/bproc_common.h... (cached) yes checking if MCA component ras:lsf_bproc can compile... yes --- MCA component ras:slurm (m4 configuration macro) checking for MCA component ras:slurm compile mode... dso checking for fork... (cached) yes checking for execve... (cached) yes checking for setpgid... (cached) yes checking if MCA component ras:slurm can compile... yes --- MCA component ras:tm (m4 configuration macro) checking for MCA component ras:tm compile mode... dso checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component ras:tm can compile... no --- MCA component ras:xgrid (m4 configuration macro) checking for MCA component ras:xgrid compile mode... dso checking for XGridFoundation Framework... (cached) no checking if MCA component ras:xgrid can compile... no +++ Configuring MCA framework rds checking for no configure components in framework rds... hostfile, resfile checking for m4 configure components in framework rds... --- MCA component rds:hostfile (no configuration) checking for MCA component rds:hostfile compile mode... dso checking if MCA component rds:hostfile can compile... yes --- MCA component rds:resfile (no configuration) checking for MCA component rds:resfile compile mode... dso checking if MCA component rds:resfile can compile... yes +++ Configuring MCA framework rmaps checking for no configure components in framework rmaps... round_robin checking for m4 configure components in framework rmaps... --- MCA component rmaps:round_robin (no configuration) checking for MCA component rmaps:round_robin compile mode... dso checking if MCA component rmaps:round_robin can compile... yes +++ Configuring MCA framework rmgr checking for no configure components in framework rmgr... proxy, urm checking for m4 configure components in framework rmgr... --- MCA component rmgr:proxy (no configuration) checking for MCA component rmgr:proxy compile mode... dso checking if MCA component rmgr:proxy can compile... yes --- MCA component rmgr:urm (no configuration) checking for MCA component rmgr:urm compile mode... dso checking if MCA component rmgr:urm can compile... yes +++ Configuring MCA framework rml checking for no configure components in framework rml... oob checking for m4 configure components in framework rml... cnos --- MCA component rml:oob (no configuration) checking for MCA component rml:oob compile mode... dso checking if MCA component rml:oob can compile... yes --- MCA component rml:cnos (m4 configuration macro) checking for MCA component rml:cnos compile mode... dso checking for cnos_barrier... no checking if MCA component rml:cnos can compile... no +++ Configuring MCA framework schema checking for no configure components in framework schema... checking for m4 configure components in framework schema... +++ Configuring MCA framework sds checking for no configure components in framework sds... env, seed, singleton, slurm checking for m4 configure components in framework sds... bproc, cnos, pipe, portals_utcp --- MCA component sds:env (no configuration) checking for MCA component sds:env compile mode... dso checking if MCA component sds:env can compile... yes --- MCA component sds:seed (no configuration) checking for MCA component sds:seed compile mode... dso checking if MCA component sds:seed can compile... yes --- MCA component sds:singleton (no configuration) checking for MCA component sds:singleton compile mode... dso checking if MCA component sds:singleton can compile... yes --- MCA component sds:slurm (no configuration) checking for MCA component sds:slurm compile mode... dso checking if MCA component sds:slurm can compile... yes --- MCA component sds:bproc (m4 configuration macro) checking for MCA component sds:bproc compile mode... dso checking for sys/bproc.h... (cached) yes checking for bproc_numnodes in -lbproc... (cached) yes checking for sys/bproc_common.h... (cached) yes checking if MCA component sds:bproc can compile... yes --- MCA component sds:cnos (m4 configuration macro) checking for MCA component sds:cnos compile mode... dso checking for cnos_get_rank... no checking if MCA component sds:cnos can compile... no --- MCA component sds:pipe (m4 configuration macro) checking for MCA component sds:pipe compile mode... dso checking for pipe... (cached) yes checking if MCA component sds:pipe can compile... yes --- MCA component sds:portals_utcp (m4 configuration macro) checking for MCA component sds:portals_utcp compile mode... dso checking for PtlGetRank... no checking if MCA component sds:portals_utcp can compile... no +++ Configuring MCA framework soh checking for no configure components in framework soh... checking for m4 configure components in framework soh... bproc --- MCA component soh:bproc (m4 configuration macro) checking for MCA component soh:bproc compile mode... dso checking for sys/bproc.h... (cached) yes checking for bproc_numnodes in -lbproc... (cached) yes checking for sys/bproc_common.h... (cached) yes checking for BPROC_API_VERSION... yes checking if MCA component soh:bproc can compile... yes *** Configuring MCA for ompi checking for frameworks for ompi... allocator, bml, btl, coll, common, io, mpool, pml, ptl, rcache, topo +++ Configuring MCA framework allocator checking for no configure components in framework allocator... basic, bucket checking for m4 configure components in framework allocator... --- MCA component allocator:basic (no configuration) checking for MCA component allocator:basic compile mode... dso checking if MCA component allocator:basic can compile... yes --- MCA component allocator:bucket (no configuration) checking for MCA component allocator:bucket compile mode... dso checking if MCA component allocator:bucket can compile... yes +++ Configuring MCA framework bml checking for no configure components in framework bml... r2 checking for m4 configure components in framework bml... --- MCA component bml:r2 (no configuration) checking for MCA component bml:r2 compile mode... dso checking if MCA component bml:r2 can compile... yes +++ Configuring MCA framework btl checking for no configure components in framework btl... self, sm checking for m4 configure components in framework btl... gm, mvapi, mx, openib, portals, tcp --- MCA component btl:self (no configuration) checking for MCA component btl:self compile mode... dso checking if MCA component btl:self can compile... yes --- MCA component btl:sm (no configuration) checking for MCA component btl:sm compile mode... dso checking if MCA component btl:sm can compile... yes --- MCA component btl:gm (m4 configuration macro) checking for MCA component btl:gm compile mode... dso checking gm.h usability... yes checking gm.h presence... yes checking for gm.h... yes looking for library without search path checking for gm_init in -lgm... yes checking for GM_API_VERSION... yes checking for gm_put()... yes checking for gm_get()... yes checking for broken GM 2.x RDMA gets build... no checking if MCA component btl:gm can compile... yes --- MCA component btl:mvapi (m4 configuration macro) checking for MCA component btl:mvapi compile mode... dso checking vapi.h usability... no checking vapi.h presence... no checking for vapi.h... no checking vapi.h usability... no checking vapi.h presence... no checking for vapi.h... no checking if MCA component btl:mvapi can compile... no --- MCA component btl:mx (m4 configuration macro) checking for MCA component btl:mx compile mode... dso checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component btl:mx can compile... no --- MCA component btl:openib (m4 configuration macro) checking for MCA component btl:openib compile mode... dso checking for sysfs_open_class in -lsysfs... no checking for cm_timeout in -lcm... no checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking for ibv_create_srq... no checking for ibv_get_device_list... no checking if MCA component btl:openib can compile... no --- MCA component btl:portals (m4 configuration macro) checking for MCA component btl:portals compile mode... dso checking for Portals configuration... utcp checking portals3.h usability... no checking portals3.h presence... no checking for portals3.h... no checking if MCA component btl:portals can compile... no --- MCA component btl:tcp (m4 configuration macro) checking for MCA component btl:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component btl:tcp can compile... yes +++ Configuring MCA framework coll checking for no configure components in framework coll... basic, self, sm checking for m4 configure components in framework coll... --- MCA component coll:basic (no configuration) checking for MCA component coll:basic compile mode... dso checking if MCA component coll:basic can compile... yes --- MCA component coll:self (no configuration) checking for MCA component coll:self compile mode... dso checking if MCA component coll:self can compile... yes --- MCA component coll:sm (no configuration) checking for MCA component coll:sm compile mode... dso checking if MCA component coll:sm can compile... yes +++ Configuring MCA framework common checking for no configure components in framework common... sm checking for m4 configure components in framework common... --- MCA component common:sm (no configuration) checking for MCA component common:sm compile mode... dso checking if MCA component common:sm can compile... yes +++ Configuring MCA framework io checking for no configure components in framework io... checking for m4 configure components in framework io... romio --- MCA component io:romio (m4 configuration macro) checking for MCA component io:romio compile mode... dso checking if want ROMIO component... yes checking if MPI profiling is enabled... yes *** Configuring ROMIO distribution configure: OMPI configuring in ompi/mca/io/romio/romio configure: running /bin/sh './configure' CFLAGS="-O3 -DNDEBUG -m32 -fno-strict-aliasing -pthread" CPPFLAGS=" " FFLAGS="-m32" LDFLAGS="" --enable-shared --disable-static --prefix=/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b --with-mpi=open_mpi --cache-file=/dev/null --srcdir=. Configuring with args CFLAGS=-O3 -DNDEBUG -m32 -fno-strict-aliasing -pthread CPPFLAGS= FFLAGS=-m32 LDFLAGS= --enable-shared --disable-static --prefix=/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b --with-mpi=open_mpi --cache-file=/dev/null --srcdir=. checking for Open MPI support files... in Open MPI source tree -- good checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for architecture... LINUX configure: WARNING: Unknown architecture ... proceeding anyway ROMIO home directory is /net/scratch1/dog/openmpi/openmpi-1.0.2/ompi/mca/io/romio/romio checking for ranlib... ranlib checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for memalign... yes checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for int... yes checking size of int... 4 checking for void*... yes checking size of void*... 4 checking for int large enough for pointers... yes checking for long long... yes checking size of long long... 8 checking whether struct flock compatible with MPI_Offset... yes checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing pthread_create... none required checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... yes checking if sys/aio.h exists and can be compiled... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... yes checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... yes checking for aio_sigevent member of aiocb structure... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for restrict... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... (cached) ranlib checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_i386 checking if the linker (/usr/bin/ld -m elf_i386) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for : option to produce PIC... -fPIC checking if : PIC flag -fPIC works... no checking if : static flag -static works... no checking if : supports -c -o file.o... no checking whether the : linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate setting CC to gcc setting F77 to : setting TEST_CC to mpicc setting TEST_F77 to mpif77 setting CFLAGS to -O3 -DNDEBUG -m32 -fno-strict-aliasing -pthread -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating adio/Makefile config.status: creating adio/ad_gridftp/Makefile config.status: creating adio/ad_hfs/Makefile config.status: creating adio/ad_nfs/Makefile config.status: creating adio/ad_ntfs/Makefile config.status: creating adio/ad_panfs/Makefile config.status: creating adio/ad_pfs/Makefile config.status: creating adio/ad_piofs/Makefile config.status: creating adio/ad_pvfs/Makefile config.status: creating adio/ad_pvfs2/Makefile config.status: creating adio/ad_sfs/Makefile config.status: creating adio/ad_testfs/Makefile config.status: creating adio/ad_ufs/Makefile config.status: creating adio/ad_xfs/Makefile config.status: creating adio/common/Makefile config.status: creating adio/include/Makefile config.status: creating doc/Makefile config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating include/Makefile config.status: creating mpi-io/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating util/romioinstall config.status: creating mpi-io/glue/openmpi/Makefile config.status: creating util/Makefile config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing default-1 commands configure: /bin/sh './configure' succeeded for ompi/mca/io/romio/romio ROMIO distribution configured successfully checking if MCA component io:romio can compile... yes +++ Configuring MCA framework mpool checking for no configure components in framework mpool... sm checking for m4 configure components in framework mpool... gm, mvapi, openib --- MCA component mpool:sm (no configuration) checking for MCA component mpool:sm compile mode... dso checking if MCA component mpool:sm can compile... yes --- MCA component mpool:gm (m4 configuration macro) checking for MCA component mpool:gm compile mode... dso checking gm.h usability... yes checking gm.h presence... yes checking for gm.h... yes looking for library without search path checking for gm_init in -lgm... yes checking for GM_API_VERSION... yes checking for gm_put()... yes checking for gm_get()... yes checking for broken GM 2.x RDMA gets build... no checking if MCA component mpool:gm can compile... yes --- MCA component mpool:mvapi (m4 configuration macro) checking for MCA component mpool:mvapi compile mode... dso checking vapi.h usability... no checking vapi.h presence... no checking for vapi.h... no checking vapi.h usability... no checking vapi.h presence... no checking for vapi.h... no checking if MCA component mpool:mvapi can compile... no --- MCA component mpool:openib (m4 configuration macro) checking for MCA component mpool:openib compile mode... dso checking for sysfs_open_class in -lsysfs... (cached) no checking for cm_timeout in -lcm... (cached) no checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking for ibv_create_srq... (cached) no checking for ibv_get_device_list... (cached) no checking if MCA component mpool:openib can compile... no +++ Configuring MCA framework pml checking for no configure components in framework pml... ob1, teg checking for m4 configure components in framework pml... --- MCA component pml:ob1 (no configuration) checking for MCA component pml:ob1 compile mode... dso checking if MCA component pml:ob1 can compile... yes --- MCA component pml:teg (no configuration) checking for MCA component pml:teg compile mode... dso checking if MCA component pml:teg can compile... yes +++ Configuring MCA framework ptl checking for no configure components in framework ptl... self, sm checking for m4 configure components in framework ptl... gm, mx, tcp --- MCA component ptl:self (no configuration) checking for MCA component ptl:self compile mode... dso checking if MCA component ptl:self can compile... yes --- MCA component ptl:sm (no configuration) checking for MCA component ptl:sm compile mode... dso checking if MCA component ptl:sm can compile... yes --- MCA component ptl:gm (m4 configuration macro) checking for MCA component ptl:gm compile mode... dso checking gm.h usability... yes checking gm.h presence... yes checking for gm.h... yes looking for library without search path checking for gm_init in -lgm... yes checking for GM_API_VERSION... yes checking for gm_put()... yes checking for gm_get()... yes checking for broken GM 2.x RDMA gets build... no checking if MCA component ptl:gm can compile... yes --- MCA component ptl:mx (m4 configuration macro) checking for MCA component ptl:mx compile mode... dso checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component ptl:mx can compile... no --- MCA component ptl:tcp (m4 configuration macro) checking for MCA component ptl:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component ptl:tcp can compile... yes +++ Configuring MCA framework rcache checking for no configure components in framework rcache... rb checking for m4 configure components in framework rcache... --- MCA component rcache:rb (no configuration) checking for MCA component rcache:rb compile mode... dso checking if MCA component rcache:rb can compile... yes +++ Configuring MCA framework topo checking for no configure components in framework topo... unity checking for m4 configure components in framework topo... --- MCA component topo:unity (no configuration) checking for MCA component topo:unity compile mode... dso checking if MCA component topo:unity can compile... yes ============================================================================ == Final top-level OMPI configuration ============================================================================ *** Libevent 3rd party event handler checking for ANSI C header files... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for poll.h... (cached) yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking for unistd.h... (cached) yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking for sys/time.h... (cached) yes checking for sys/queue.h... (cached) yes checking sys/event.h usability... no checking sys/event.h presence... no checking for sys/event.h... no checking for TAILQ_FOREACH in sys/queue.h... no checking for timeradd in sys/time.h... yes checking whether time.h and sys/time.h may both be included... yes checking for gettimeofday... yes checking for select... yes checking for poll... yes checking for epoll_ctl... yes checking for epoll_ctl on broken Linux distros... no checking for epoll system call... yes checking for err... yes checking for pid_t... (cached) yes checking for size_t... (cached) yes checking for u_int64_t... yes checking for u_int32_t... yes checking for u_int16_t... yes checking for u_int8_t... yes checking for socklen_t... yes *** Libtool configuration checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking how to recognise dependent libraries... pass_all checking for dlfcn.h... (cached) yes checking how to run the C++ preprocessor... g++ -E checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate *** GNU libltdl setup configure: OMPI configuring in opal/libltdl configure: running /bin/sh './configure' '--prefix=/net/scratch1/dog/flash64/openmpi/openmpi-1.0.2-32b' '--build=i686-pc-linux-gnu' '--with-bproc' '--with-gm' '--enable-io-romio' '--with-romio' '--with-io-romio-flags=--build=i686-pc-linux-gnu' 'CC=gcc' 'CFLAGS=-m32' 'CXXFLAGS=-m32' 'CXX=g++' 'F77=gfortran' 'FCFLAGS=-m32' 'FC=gfortran' 'FFLAGS=-m32' 'LDFLAGS=-L/usr/lib' 'build_alias=i686-pc-linux-gnu' --enable-ltdl-convenience --disable-ltdl-install --enable-shared --disable-static --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gcc... gcc configure: WARNING: In the future, Autoconf will not detect cross-tools whose name does not start with the host triplet. If you think this configuration is useful to you, please write to autoconf@gnu.org. checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for an ANSI C-conforming const... yes checking for inline... inline checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking which extension is used for loadable modules... .so checking which variable specifies run-time library path... LD_LIBRARY_PATH checking for the default library search path... /lib /usr/lib /usr/lib/octave-2.1.57 /usr/lib64/octave-2.1.57 /usr/lib/qt-3.3/lib /usr/lib64/qt-3.3/lib /usr/X11R6/lib /usr/X11R6/lib64 /usr/X11R6/lib /usr/X11R6/lib64 /usr/lib/mysql /usr/lib64/mysql checking for objdir... .libs checking whether libtool supports -dlopen/-dlpreopen... yes checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen in -ldl... yes checking for dlerror... yes checking for _ prefix in compiled symbols... no checking whether deplibs are loaded by dlopen... yes checking argz.h usability... yes checking argz.h presence... yes checking for argz.h... yes checking for error_t... yes checking for argz_append... yes checking for argz_create_sep... yes checking for argz_insert... yes checking for argz_next... yes checking for argz_stringify... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for memory.h... (cached) yes checking for stdlib.h... (cached) yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for unistd.h... (cached) yes checking dl.h usability... no checking dl.h presence... no checking for dl.h... no checking sys/dl.h usability... no checking sys/dl.h presence... no checking for sys/dl.h... no checking dld.h usability... no checking dld.h presence... no checking for dld.h... no checking mach-o/dyld.h usability... no checking mach-o/dyld.h presence... no checking for mach-o/dyld.h... no checking for string.h... (cached) yes checking for strchr... yes checking for strrchr... yes checking for memcpy... yes checking for memmove... yes checking for strcmp... yes checking for closedir... yes checking for opendir... yes checking for readdir... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands configure: /bin/sh './configure' succeeded for opal/libltdl checking for libtool-supplied linker flags... -Wl,--export-dynamic -lutil -lnsl -lm -ldl *** Compiler flags checking which of CFLAGS are ok for TotalView modules... -DNDEBUG -m32 -fno-strict-aliasing -pthread checking extra CFLAGS for TotalView modules... -g checking for libmpi additional LDFLAGS... checking for libmpi additional LIBS... *** Wrapper compiler flags checking for mpicc CFLAGS... -pthread checking for mpiCC CXXFLAGS... -pthread checking for mpif77/mpif90 FFLAGS... -pthread checking for mpif77/mpif90 FCFLAGS... -pthread checking for wrapper compiler LDFLAGS... checking for wrapper compiler LIBS... -lutil -lnsl -ldl -Wl,--export-dynamic -lutil -lnsl -lm -ldl *** Final output configure: creating ./config.status config.status: creating opal/mca/maffinity/Makefile config.status: creating opal/dynamic-mca/maffinity/Makefile config.status: creating opal/mca/maffinity/base/Makefile config.status: creating opal/mca/memory/Makefile config.status: creating opal/dynamic-mca/memory/Makefile config.status: creating opal/mca/memory/base/Makefile config.status: creating opal/mca/paffinity/Makefile config.status: creating opal/dynamic-mca/paffinity/Makefile config.status: creating opal/mca/paffinity/base/Makefile config.status: creating opal/mca/timer/Makefile config.status: creating opal/dynamic-mca/timer/Makefile config.status: creating opal/mca/timer/base/Makefile config.status: creating orte/mca/errmgr/Makefile config.status: creating orte/dynamic-mca/errmgr/Makefile config.status: creating orte/mca/errmgr/base/Makefile config.status: creating orte/mca/gpr/Makefile config.status: creating orte/dynamic-mca/gpr/Makefile config.status: creating orte/mca/gpr/base/Makefile config.status: creating orte/mca/iof/Makefile config.status: creating orte/dynamic-mca/iof/Makefile config.status: creating orte/mca/iof/base/Makefile config.status: creating orte/mca/ns/Makefile config.status: creating orte/dynamic-mca/ns/Makefile config.status: creating orte/mca/ns/base/Makefile config.status: creating orte/mca/oob/Makefile config.status: creating orte/dynamic-mca/oob/Makefile config.status: creating orte/mca/oob/base/Makefile config.status: creating orte/mca/pls/Makefile config.status: creating orte/dynamic-mca/pls/Makefile config.status: creating orte/mca/pls/base/Makefile config.status: creating orte/mca/ras/Makefile config.status: creating orte/dynamic-mca/ras/Makefile config.status: creating orte/mca/ras/base/Makefile config.status: creating orte/mca/rds/Makefile config.status: creating orte/dynamic-mca/rds/Makefile config.status: creating orte/mca/rds/base/Makefile config.status: creating orte/mca/rmaps/Makefile config.status: creating orte/dynamic-mca/rmaps/Makefile config.status: creating orte/mca/rmaps/base/Makefile config.status: creating orte/mca/rmgr/Makefile config.status: creating orte/dynamic-mca/rmgr/Makefile config.status: creating orte/mca/rmgr/base/Makefile config.status: creating orte/mca/rml/Makefile config.status: creating orte/dynamic-mca/rml/Makefile config.status: creating orte/mca/rml/base/Makefile config.status: creating orte/mca/schema/Makefile config.status: creating orte/dynamic-mca/schema/Makefile config.status: creating orte/mca/schema/base/Makefile config.status: creating orte/mca/sds/Makefile config.status: creating orte/dynamic-mca/sds/Makefile config.status: creating orte/mca/sds/base/Makefile config.status: creating orte/mca/soh/Makefile config.status: creating orte/dynamic-mca/soh/Makefile config.status: creating orte/mca/soh/base/Makefile config.status: creating ompi/mca/allocator/Makefile config.status: creating ompi/dynamic-mca/allocator/Makefile config.status: creating ompi/mca/allocator/base/Makefile config.status: creating ompi/mca/bml/Makefile config.status: creating ompi/dynamic-mca/bml/Makefile config.status: creating ompi/mca/bml/base/Makefile config.status: creating ompi/mca/btl/Makefile config.status: creating ompi/dynamic-mca/btl/Makefile config.status: creating ompi/mca/btl/base/Makefile config.status: creating ompi/mca/coll/Makefile config.status: creating ompi/dynamic-mca/coll/Makefile config.status: creating ompi/mca/coll/base/Makefile config.status: creating ompi/mca/common/Makefile config.status: creating ompi/dynamic-mca/common/Makefile config.status: creating ompi/mca/io/Makefile config.status: creating ompi/dynamic-mca/io/Makefile config.status: creating ompi/mca/io/base/Makefile config.status: creating ompi/mca/mpool/Makefile config.status: creating ompi/dynamic-mca/mpool/Makefile config.status: creating ompi/mca/mpool/base/Makefile config.status: creating ompi/mca/pml/Makefile config.status: creating ompi/dynamic-mca/pml/Makefile config.status: creating ompi/mca/pml/base/Makefile config.status: creating ompi/mca/ptl/Makefile config.status: creating ompi/dynamic-mca/ptl/Makefile config.status: creating ompi/mca/ptl/base/Makefile config.status: creating ompi/mca/rcache/Makefile config.status: creating ompi/dynamic-mca/rcache/Makefile config.status: creating ompi/mca/rcache/base/Makefile config.status: creating ompi/mca/topo/Makefile config.status: creating ompi/dynamic-mca/topo/Makefile config.status: creating ompi/mca/topo/base/Makefile config.status: creating ompi/mca/pml/pml_direct_call.h.template config.status: creating opal/mca/maffinity/first_use/Makefile config.status: creating opal/mca/maffinity/libnuma/Makefile config.status: creating opal/mca/memory/darwin/Makefile config.status: creating opal/mca/memory/malloc_hooks/Makefile config.status: creating opal/mca/memory/malloc_interpose/Makefile config.status: creating opal/mca/memory/ptmalloc2/Makefile config.status: creating opal/mca/paffinity/linux/Makefile config.status: creating opal/mca/paffinity/solaris/Makefile config.status: creating opal/mca/timer/aix/Makefile config.status: creating opal/mca/timer/altix/Makefile config.status: creating opal/mca/timer/darwin/Makefile config.status: creating opal/mca/timer/linux/Makefile config.status: creating opal/mca/timer/solaris/Makefile config.status: creating orte/mca/gpr/null/Makefile config.status: creating orte/mca/gpr/proxy/Makefile config.status: creating orte/mca/gpr/replica/Makefile config.status: creating orte/mca/gpr/replica/api_layer/Makefile config.status: creating orte/mca/gpr/replica/transition_layer/Makefile config.status: creating orte/mca/gpr/replica/functional_layer/Makefile config.status: creating orte/mca/gpr/replica/communications/Makefile config.status: creating orte/mca/iof/proxy/Makefile config.status: creating orte/mca/iof/svc/Makefile config.status: creating orte/mca/ns/proxy/Makefile config.status: creating orte/mca/ns/replica/Makefile config.status: creating orte/mca/oob/tcp/Makefile config.status: creating orte/mca/pls/bproc/Makefile config.status: creating orte/mca/pls/bproc_orted/Makefile config.status: creating orte/mca/pls/daemon/Makefile config.status: creating orte/mca/pls/fork/Makefile config.status: creating orte/mca/pls/poe/Makefile config.status: creating orte/mca/pls/proxy/Makefile config.status: creating orte/mca/pls/rsh/Makefile config.status: creating orte/mca/pls/slurm/Makefile config.status: creating orte/mca/pls/tm/Makefile config.status: creating orte/mca/pls/xgrid/Makefile config.status: creating orte/mca/ras/bjs/Makefile config.status: creating orte/mca/ras/dash_host/Makefile config.status: creating orte/mca/ras/hostfile/Makefile config.status: creating orte/mca/ras/localhost/Makefile config.status: creating orte/mca/ras/lsf_bproc/Makefile config.status: creating orte/mca/ras/slurm/Makefile config.status: creating orte/mca/ras/tm/Makefile config.status: creating orte/mca/ras/xgrid/Makefile config.status: creating orte/mca/rds/hostfile/Makefile config.status: creating orte/mca/rds/resfile/Makefile config.status: creating orte/mca/rmaps/round_robin/Makefile config.status: creating orte/mca/rmgr/proxy/Makefile config.status: creating orte/mca/rmgr/urm/Makefile config.status: creating orte/mca/rml/cnos/Makefile config.status: creating orte/mca/rml/oob/Makefile config.status: creating orte/mca/sds/bproc/Makefile config.status: creating orte/mca/sds/cnos/Makefile config.status: creating orte/mca/sds/env/Makefile config.status: creating orte/mca/sds/pipe/Makefile config.status: creating orte/mca/sds/portals_utcp/Makefile config.status: creating orte/mca/sds/seed/Makefile config.status: creating orte/mca/sds/singleton/Makefile config.status: creating orte/mca/sds/slurm/Makefile config.status: creating orte/mca/soh/bproc/Makefile config.status: creating ompi/mca/allocator/basic/Makefile config.status: creating ompi/mca/allocator/bucket/Makefile config.status: creating ompi/mca/bml/r2/Makefile config.status: creating ompi/mca/btl/gm/Makefile config.status: creating ompi/mca/btl/mvapi/Makefile config.status: creating ompi/mca/btl/mx/Makefile config.status: creating ompi/mca/btl/openib/Makefile config.status: creating ompi/mca/btl/portals/Makefile config.status: creating ompi/mca/btl/self/Makefile config.status: creating ompi/mca/btl/sm/Makefile config.status: creating ompi/mca/btl/tcp/Makefile config.status: creating ompi/mca/coll/basic/Makefile config.status: creating ompi/mca/coll/self/Makefile config.status: creating ompi/mca/coll/sm/Makefile config.status: creating ompi/mca/common/sm/Makefile config.status: creating ompi/mca/io/romio/Makefile config.status: creating ompi/mca/mpool/gm/Makefile config.status: creating ompi/mca/mpool/mvapi/Makefile config.status: creating ompi/mca/mpool/openib/Makefile config.status: creating ompi/mca/mpool/sm/Makefile config.status: creating ompi/mca/pml/ob1/Makefile config.status: creating ompi/mca/pml/teg/Makefile config.status: creating ompi/mca/ptl/gm/Makefile config.status: creating ompi/mca/ptl/mx/Makefile config.status: creating ompi/mca/ptl/self/Makefile config.status: creating ompi/mca/ptl/sm/Makefile config.status: creating ompi/mca/ptl/tcp/Makefile config.status: creating ompi/mca/rcache/rb/Makefile config.status: creating ompi/mca/topo/unity/Makefile config.status: creating Makefile config.status: creating config/Makefile config.status: creating include/Makefile config.status: creating include/mpif.h config.status: creating etc/Makefile config.status: creating contrib/Makefile config.status: creating opal/Makefile config.status: creating opal/include/Makefile config.status: creating opal/include/sys/Makefile config.status: creating opal/include/sys/alpha/Makefile config.status: creating opal/include/sys/amd64/Makefile config.status: creating opal/include/sys/ia32/Makefile config.status: creating opal/include/sys/ia64/Makefile config.status: creating opal/include/sys/mips/Makefile config.status: creating opal/include/sys/powerpc/Makefile config.status: creating opal/include/sys/sparc/Makefile config.status: creating opal/include/sys/sparcv9/Makefile config.status: creating opal/include/sys/win32/Makefile config.status: creating opal/asm/Makefile config.status: creating opal/class/Makefile config.status: creating opal/event/Makefile config.status: creating opal/event/compat/Makefile config.status: creating opal/event/compat/sys/Makefile config.status: creating opal/memoryhooks/Makefile config.status: creating opal/runtime/Makefile config.status: creating opal/threads/Makefile config.status: creating opal/util/Makefile config.status: creating opal/mca/Makefile config.status: creating opal/dynamic-mca/Makefile config.status: creating opal/mca/base/Makefile config.status: creating orte/Makefile config.status: creating orte/include/Makefile config.status: creating orte/class/Makefile config.status: creating orte/dps/Makefile config.status: creating orte/runtime/Makefile config.status: creating orte/util/Makefile config.status: creating orte/tools/Makefile config.status: creating orte/tools/orted/Makefile config.status: creating orte/tools/orteprobe/Makefile config.status: creating orte/tools/orterun/Makefile config.status: creating orte/mca/Makefile config.status: creating orte/dynamic-mca/Makefile config.status: creating ompi/Makefile config.status: creating ompi/include/Makefile config.status: creating ompi/class/Makefile config.status: creating ompi/attribute/Makefile config.status: creating ompi/communicator/Makefile config.status: creating ompi/datatype/Makefile config.status: creating ompi/debuggers/Makefile config.status: creating ompi/errhandler/Makefile config.status: creating ompi/file/Makefile config.status: creating ompi/group/Makefile config.status: creating ompi/info/Makefile config.status: creating ompi/op/Makefile config.status: creating ompi/proc/Makefile config.status: creating ompi/request/Makefile config.status: creating ompi/runtime/Makefile config.status: creating ompi/win/Makefile config.status: creating ompi/mpi/Makefile config.status: creating ompi/mpi/c/Makefile config.status: creating ompi/mpi/c/profile/Makefile config.status: creating ompi/mpi/cxx/Makefile config.status: creating ompi/mpi/f77/Makefile config.status: creating ompi/mpi/f77/profile/Makefile config.status: creating ompi/mpi/f90/Makefile config.status: creating ompi/mpi/f90/fortran_kinds.sh config.status: creating ompi/mpi/f90/fortran_sizes.h config.status: creating ompi/mpi/f90/scripts/Makefile config.status: creating ompi/tools/Makefile config.status: creating ompi/tools/ompi_info/Makefile config.status: creating ompi/tools/wrappers/Makefile config.status: creating ompi/mca/Makefile config.status: creating ompi/dynamic-mca/Makefile config.status: creating test/Makefile config.status: creating test/asm/Makefile config.status: creating test/class/Makefile config.status: creating test/dps/Makefile config.status: creating test/mca/Makefile config.status: creating test/mca/gpr/Makefile config.status: creating test/mca/ns/Makefile config.status: creating test/mca/oob/Makefile config.status: creating test/mca/ras/Makefile config.status: creating test/mca/rds/Makefile config.status: creating test/mca/rmaps/Makefile config.status: creating test/mca/schema/Makefile config.status: creating test/memory/Makefile config.status: creating test/runtime/Makefile config.status: creating test/support/Makefile config.status: creating test/threads/Makefile config.status: creating test/util/Makefile config.status: creating include/ompi_config.h config.status: creating include/mpi.h config.status: linking ./opal/mca/timer/linux/timer_linux.h to opal/mca/timer/base/base_impl.h config.status: linking ./ompi/mca/btl/portals/btl_portals_compat_utcp.c to ompi/mca/btl/portals/btl_portals_compat.c config.status: executing depfiles commands config.status: executing pml-direct commands config.status: creating ompi/mca/pml/pml_direct_call.h