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Subject: Re: [OMPI users] non-functional mpif90 compiler
From: Damiano Natali (damiano.natali_at_[hidden])
Date: 2013-09-30 15:01:05


Dear Jeff,

thanks for your help.

Maybe I found a clue: in the ompi_info output is the following

 Package: Open MPI damiano_at_[hidden]
                          Distribution
                Open MPI: 1.6.4
   Open MPI SVN revision: r28081
   Open MPI release date: Feb 19, 2013
                Open RTE: 1.6.4
   Open RTE SVN revision: r28081
   Open RTE release date: Feb 19, 2013
                    OPAL: 1.6.4
       OPAL SVN revision: r28081
       OPAL release date: Feb 19, 2013
                 MPI API: 2.1
            Ident string: 1.6.4
                  Prefix:
/home/damiano/OpenFOAM/ThirdParty-2.2.0/platforms/linux64Gcc/openmpi-1.6.3
 Configured architecture: x86_64-unknown-linux-gnu
          Configure host: caillou.dicat.unige.it
           Configured by: damiano
           Configured on: Mon Sep 30 20:23:06 CEST 2013
          Configure host: caillou.dicat.unige.it
                Built by: damiano
                Built on: Mon Sep 30 20:33:17 CEST 2013
              Built host: caillou.dicat.unige.it
              C bindings: yes
            C++ bindings: yes
      Fortran77 bindings: yes (all)
      Fortran90 bindings: yes
 Fortran90 bindings size: medium
              C compiler: gcc
     C compiler absolute: /usr/bin/gcc
  C compiler family name: GNU
      C compiler version: 4.7.1
            C++ compiler: g++
   C++ compiler absolute: /usr/bin/g++
      Fortran77 compiler: gfortran
  Fortran77 compiler abs: /usr/bin/gfortran
      Fortran90 compiler: gfortran
  Fortran90 compiler abs: /usr/bin/gfortran
             C profiling: yes
           C++ profiling: yes
     Fortran77 profiling: yes
     Fortran90 profiling: yes
          C++ exceptions: no
          Thread support: posix (MPI_THREAD_MULTIPLE: no, progress: no)
           Sparse Groups: no
  Internal debug support: no
  MPI interface warnings: no
     MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
         libltdl support: yes
   Heterogeneous support: no
 mpirun default --prefix: no
         MPI I/O support: yes
       MPI_WTIME support: gettimeofday
     Symbol vis. support: yes
   Host topology support: yes
          MPI extensions: affinity example
   FT Checkpoint support: no (checkpoint thread: no)
     VampirTrace support: yes
  MPI_MAX_PROCESSOR_NAME: 256
    MPI_MAX_ERROR_STRING: 256
     MPI_MAX_OBJECT_NAME: 64
        MPI_MAX_INFO_KEY: 36
        MPI_MAX_INFO_VAL: 256
       MPI_MAX_PORT_NAME: 1024
  MPI_MAX_DATAREP_STRING: 128
           MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.6.4)
              MCA memory: linux (MCA v2.0, API v2.0, Component v1.6.4)
           MCA paffinity: hwloc (MCA v2.0, API v2.0, Component v1.6.4)
               MCA carto: auto_detect (MCA v2.0, API v2.0, Component
                          v1.6.4)
               MCA carto: file (MCA v2.0, API v2.0, Component v1.6.4)
               MCA shmem: mmap (MCA v2.0, API v2.0, Component v1.6.4)
               MCA shmem: posix (MCA v2.0, API v2.0, Component v1.6.4)
               MCA shmem: sysv (MCA v2.0, API v2.0, Component v1.6.4)
           MCA maffinity: first_use (MCA v2.0, API v2.0, Component
                          v1.6.4)
           MCA maffinity: hwloc (MCA v2.0, API v2.0, Component v1.6.4)
               MCA timer: linux (MCA v2.0, API v2.0, Component v1.6.4)
         MCA installdirs: env (MCA v2.0, API v2.0, Component v1.6.4)
         MCA installdirs: config (MCA v2.0, API v2.0, Component v1.6.4)
             MCA sysinfo: linux (MCA v2.0, API v2.0, Component v1.6.4)
               MCA hwloc: hwloc132 (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA dpm: orte (MCA v2.0, API v2.0, Component v1.6.4)
              MCA pubsub: orte (MCA v2.0, API v2.0, Component v1.6.4)
           MCA allocator: basic (MCA v2.0, API v2.0, Component v1.6.4)
           MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.6.4)
                MCA coll: basic (MCA v2.0, API v2.0, Component v1.6.4)
                MCA coll: hierarch (MCA v2.0, API v2.0, Component v1.6.4)
                MCA coll: inter (MCA v2.0, API v2.0, Component v1.6.4)
                MCA coll: self (MCA v2.0, API v2.0, Component v1.6.4)
                MCA coll: sm (MCA v2.0, API v2.0, Component v1.6.4)
                MCA coll: sync (MCA v2.0, API v2.0, Component v1.6.4)
                MCA coll: tuned (MCA v2.0, API v2.0, Component v1.6.4)
                  MCA io: romio (MCA v2.0, API v2.0, Component v1.6.4)
               MCA mpool: fake (MCA v2.0, API v2.0, Component v1.6.4)
               MCA mpool: rdma (MCA v2.0, API v2.0, Component v1.6.4)
               MCA mpool: sm (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA pml: bfo (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA pml: csum (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA pml: v (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA bml: r2 (MCA v2.0, API v2.0, Component v1.6.4)
              MCA rcache: vma (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA btl: self (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA btl: sm (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA btl: tcp (MCA v2.0, API v2.0, Component v1.6.4)
                MCA topo: unity (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA osc: rdma (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA iof: hnp (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA iof: orted (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA iof: tool (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA oob: tcp (MCA v2.0, API v2.0, Component v1.6.4)
                MCA odls: default (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA ras: cm (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA ras: loadleveler (MCA v2.0, API v2.0, Component
                          v1.6.4)
                 MCA ras: slurm (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA ras: gridengine (MCA v2.0, API v2.0, Component
                          v1.6.3)
               MCA rmaps: load_balance (MCA v2.0, API v2.0, Component
                          v1.6.4)
               MCA rmaps: rank_file (MCA v2.0, API v2.0, Component
                          v1.6.4)
               MCA rmaps: resilient (MCA v2.0, API v2.0, Component
                          v1.6.4)
               MCA rmaps: round_robin (MCA v2.0, API v2.0, Component
                          v1.6.4)
               MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.6.4)
               MCA rmaps: topo (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA rml: oob (MCA v2.0, API v2.0, Component v1.6.4)
              MCA routed: binomial (MCA v2.0, API v2.0, Component v1.6.4)
              MCA routed: cm (MCA v2.0, API v2.0, Component v1.6.4)
              MCA routed: direct (MCA v2.0, API v2.0, Component v1.6.4)
              MCA routed: linear (MCA v2.0, API v2.0, Component v1.6.4)
              MCA routed: radix (MCA v2.0, API v2.0, Component v1.6.4)
              MCA routed: slave (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA plm: rsh (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA plm: slurm (MCA v2.0, API v2.0, Component v1.6.4)
               MCA filem: rsh (MCA v2.0, API v2.0, Component v1.6.4)
              MCA errmgr: default (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA ess: env (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA ess: hnp (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA ess: singleton (MCA v2.0, API v2.0, Component
                          v1.6.4)
                 MCA ess: slave (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA ess: slurm (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA ess: slurmd (MCA v2.0, API v2.0, Component v1.6.4)
                 MCA ess: tool (MCA v2.0, API v2.0, Component v1.6.4)
             MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.6.4)
             MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.6.4)
             MCA grpcomm: hier (MCA v2.0, API v2.0, Component v1.6.4)
            MCA notifier: command (MCA v2.0, API v1.0, Component v1.6.4)
            MCA notifier: syslog (MCA v2.0, API v1.0, Component v1.6.4)

Please note the Prefix line. I'm sure I runned the './configure' command
with the prefix '--prefix=/home/damiano/fortran/openmpi/', and I checked
that that openmpi version is neither on my path or library path!

This is surely a problem, do you know how to fix it?

Thanks again,
Damiano

2013/9/30 Jeff Squyres (jsquyres) <jsquyres_at_[hidden]>

> On Sep 30, 2013, at 12:16 PM, Gus Correa <gus_at_[hidden]> wrote:
>
> > "which mpif90" will tell you what you are actually using.
>
> This is what I'm guessing is wrong -- if ompi_info is telling you that you
> have Fortran bindings available, then I'm guessing you're somehow getting
> the "wrong" mpif90 (i.e., an mpif90 from an OMPI installation with no
> Fortran bindings support). Check your PATH.
>
> --
> Jeff Squyres
> jsquyres_at_[hidden]
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
> _______________________________________________
> users mailing list
> users_at_[hidden]
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>

-- 
Damiano Natali
mail damiano.natali_at_[hidden]
skype damiano.natali