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Subject: Re: [OMPI users] non-functional mpif90 compiler
From: Gus Correa (gus_at_[hidden])
Date: 2013-09-30 12:16:11


Hi Damiano

Did you setup your PATH and LD_LIBRARY_PATH
to point to your OMPI installation?
I.e. to:
  /home/damiano/fortran/openmpi-1.6.5/installation/bin
and
  /home/damiano/fortran/openmpi-1.6.5/installation/lib

Some OS distributions, commercial compilers, and other software,
come with "extra" OMPI installations, which can be ahead of
your path.
"which mpif90" will tell you what you are actually using.

For what it is worth, disabling shared libraries
at configure time may be challenging.

I hope this helps,
Gus Correa

On 09/30/2013 11:58 AM, Damiano Natali wrote:
> Dear list,
>
> I'm trying to install openMPI on a Linux 64-bit OpenSuse machine with
> the following lines
>
> ./configure FC=gfortran
> --prefix=/home/damiano/fortran/openmpi-1.6.5/installation/
> --disable-shared --enable-static --with-mpi-f90-size=medium
> --enable-mpi-f90 cflags=-m64 cxxflags=-m64 fflags=-m64 fcflags=-m64
> make -j4 all
> make install
>
> everything goes on nicely and I end up with an installation folder with
> a bin subfolder. However, when I try to launch the mpif90 compiler the
> error
>
> --------------------------------------------------------------------------
> Unfortunately, this installation of Open MPI was not compiled with
> Fortran 90 support. As such, the mpif90 compiler is non-functional.
> --------------------------------------------------------------------------
>
> is still there. The output of the ompi_info is
>
> Configured architecture: x86_64-unknown-linux-gnu
> Configure host: caillou.dicat.unige.it
> <http://caillou.dicat.unige.it>
> Configured by: damiano
> Configured on: Mon Sep 30 17:17:39 CEST 2013
> Configure host: caillou.dicat.unige.it
> <http://caillou.dicat.unige.it>
> Built by: damiano
> Built on: Mon Sep 30 17:26:12 CEST 2013
> Built host: caillou.dicat.unige.it
> <http://caillou.dicat.unige.it>
> C bindings: yes
> C++ bindings: yes
> Fortran77 bindings: yes (all)
> Fortran90 bindings: yes
> Fortran90 bindings size: medium
> C compiler: gcc
> C compiler absolute: /usr/bin/gcc
> C compiler family name: GNU
> C compiler version: 4.7.1
> C++ compiler: g++
> C++ compiler absolute: /usr/bin/g++
> Fortran77 compiler: gfortran
> Fortran77 compiler abs: /usr/bin/gfortran
> Fortran90 compiler: gfortran
> Fortran90 compiler abs: /usr/bin/gfortran
> C profiling: yes
> C++ profiling: yes
> Fortran77 profiling: yes
> Fortran90 profiling: yes
> C++ exceptions: no
> Thread support: posix (MPI_THREAD_MULTIPLE: no, progress: no)
> Sparse Groups: no
> Internal debug support: no
> MPI interface warnings: no
> MPI parameter check: runtime
> Memory profiling support: no
> Memory debugging support: no
> libltdl support: yes
> Heterogeneous support: no
> mpirun default --prefix: no
> MPI I/O support: yes
> MPI_WTIME support: gettimeofday
> Symbol vis. support: yes
> Host topology support: yes
> MPI extensions: affinity example
> FT Checkpoint support: no (checkpoint thread: no)
> VampirTrace support: yes
> MPI_MAX_PROCESSOR_NAME: 256
> MPI_MAX_ERROR_STRING: 256
> MPI_MAX_OBJECT_NAME: 64
> MPI_MAX_INFO_KEY: 36
> MPI_MAX_INFO_VAL: 256
> MPI_MAX_PORT_NAME: 1024
> MPI_MAX_DATAREP_STRING: 128
> MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.6.4)
> MCA memory: linux (MCA v2.0, API v2.0, Component v1.6.4)
> MCA paffinity: hwloc (MCA v2.0, API v2.0, Component v1.6.4)
> MCA carto: auto_detect (MCA v2.0, API v2.0, Component
> v1.6.4)
> MCA carto: file (MCA v2.0, API v2.0, Component v1.6.4)
> MCA shmem: mmap (MCA v2.0, API v2.0, Component v1.6.4)
> MCA shmem: posix (MCA v2.0, API v2.0, Component v1.6.4)
> MCA shmem: sysv (MCA v2.0, API v2.0, Component v1.6.4)
> MCA maffinity: first_use (MCA v2.0, API v2.0, Component v1.6.4)
> MCA maffinity: hwloc (MCA v2.0, API v2.0, Component v1.6.4)
> MCA timer: linux (MCA v2.0, API v2.0, Component v1.6.4)
> MCA installdirs: env (MCA v2.0, API v2.0, Component v1.6.4)
> MCA installdirs: config (MCA v2.0, API v2.0, Component v1.6.4)
> MCA sysinfo: linux (MCA v2.0, API v2.0, Component v1.6.4)
> MCA hwloc: hwloc132 (MCA v2.0, API v2.0, Component v1.6.4)
> MCA dpm: orte (MCA v2.0, API v2.0, Component v1.6.4)
> MCA pubsub: orte (MCA v2.0, API v2.0, Component v1.6.4)
> MCA allocator: basic (MCA v2.0, API v2.0, Component v1.6.4)
> MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.6.4)
> MCA coll: basic (MCA v2.0, API v2.0, Component v1.6.4)
> MCA coll: hierarch (MCA v2.0, API v2.0, Component v1.6.4)
> MCA coll: inter (MCA v2.0, API v2.0, Component v1.6.4)
> MCA coll: self (MCA v2.0, API v2.0, Component v1.6.4)
> MCA coll: sm (MCA v2.0, API v2.0, Component v1.6.4)
> MCA coll: sync (MCA v2.0, API v2.0, Component v1.6.4)
> MCA coll: tuned (MCA v2.0, API v2.0, Component v1.6.4)
> MCA io: romio (MCA v2.0, API v2.0, Component v1.6.4)
> MCA mpool: fake (MCA v2.0, API v2.0, Component v1.6.4)
> MCA mpool: rdma (MCA v2.0, API v2.0, Component v1.6.4)
> MCA mpool: sm (MCA v2.0, API v2.0, Component v1.6.4)
> MCA pml: bfo (MCA v2.0, API v2.0, Component v1.6.4)
> MCA pml: csum (MCA v2.0, API v2.0, Component v1.6.4)
> MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.6.4)
> MCA pml: v (MCA v2.0, API v2.0, Component v1.6.4)
> MCA bml: r2 (MCA v2.0, API v2.0, Component v1.6.4)
> MCA rcache: vma (MCA v2.0, API v2.0, Component v1.6.4)
> MCA btl: self (MCA v2.0, API v2.0, Component v1.6.4)
> MCA btl: sm (MCA v2.0, API v2.0, Component v1.6.4)
> MCA btl: tcp (MCA v2.0, API v2.0, Component v1.6.4)
> MCA topo: unity (MCA v2.0, API v2.0, Component v1.6.4)
> MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.6.4)
> MCA osc: rdma (MCA v2.0, API v2.0, Component v1.6.4)
> MCA iof: hnp (MCA v2.0, API v2.0, Component v1.6.4)
> MCA iof: orted (MCA v2.0, API v2.0, Component v1.6.4)
> MCA iof: tool (MCA v2.0, API v2.0, Component v1.6.4)
> MCA oob: tcp (MCA v2.0, API v2.0, Component v1.6.4)
> MCA odls: default (MCA v2.0, API v2.0, Component v1.6.4)
> MCA ras: cm (MCA v2.0, API v2.0, Component v1.6.4)
> MCA ras: loadleveler (MCA v2.0, API v2.0, Component
> v1.6.4)
> MCA ras: slurm (MCA v2.0, API v2.0, Component v1.6.4)
> MCA ras: gridengine (MCA v2.0, API v2.0, Component v1.6.3)
> MCA rmaps: load_balance (MCA v2.0, API v2.0, Component
> v1.6.4)
> MCA rmaps: rank_file (MCA v2.0, API v2.0, Component v1.6.4)
> MCA rmaps: resilient (MCA v2.0, API v2.0, Component v1.6.4)
> MCA rmaps: round_robin (MCA v2.0, API v2.0, Component
> v1.6.4)
> MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.6.4)
> MCA rmaps: topo (MCA v2.0, API v2.0, Component v1.6.4)
> MCA rml: oob (MCA v2.0, API v2.0, Component v1.6.4)
> MCA routed: binomial (MCA v2.0, API v2.0, Component v1.6.4)
> MCA routed: cm (MCA v2.0, API v2.0, Component v1.6.4)
> MCA routed: direct (MCA v2.0, API v2.0, Component v1.6.4)
> MCA routed: linear (MCA v2.0, API v2.0, Component v1.6.4)
> MCA routed: radix (MCA v2.0, API v2.0, Component v1.6.4)
> MCA routed: slave (MCA v2.0, API v2.0, Component v1.6.4)
> MCA plm: rsh (MCA v2.0, API v2.0, Component v1.6.4)
> MCA plm: slurm (MCA v2.0, API v2.0, Component v1.6.4)
> MCA filem: rsh (MCA v2.0, API v2.0, Component v1.6.4)
> MCA errmgr: default (MCA v2.0, API v2.0, Component v1.6.4)
> MCA ess: env (MCA v2.0, API v2.0, Component v1.6.4)
> MCA ess: hnp (MCA v2.0, API v2.0, Component v1.6.4)
> MCA ess: singleton (MCA v2.0, API v2.0, Component v1.6.4)
> MCA ess: slave (MCA v2.0, API v2.0, Component v1.6.4)
> MCA ess: slurm (MCA v2.0, API v2.0, Component v1.6.4)
> MCA ess: slurmd (MCA v2.0, API v2.0, Component v1.6.4)
> MCA ess: tool (MCA v2.0, API v2.0, Component v1.6.4)
> MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.6.4)
> MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.6.4)
> MCA grpcomm: hier (MCA v2.0, API v2.0, Component v1.6.4)
> MCA notifier: command (MCA v2.0, API v1.0, Component v1.6.4)
> MCA notifier: syslog (MCA v2.0, API v1.0, Component v1.6.4)
>
> as far as I know, the f90 bindings seem to be configured properly. What
> can be wrong?
>
> Thanks you for your attention,
> Damiano
>
> --
> Damiano Natali
> mail damiano.natali_at_[hidden] <mailto:damiano.natali_at_[hidden]>
> skype damiano.natali
>
>
>
>
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