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Subject: [OMPI users] "make check" hangs with openmpi-1.7.3a1r29220 on Linux
From: Siegmar Gross (Siegmar.Gross_at_[hidden])
Date: 2013-09-21 13:06:32


Hi,

today I build openmpi-1.7.3a1r29220 with Sun C 5.12 and gcc-4.8.0
on Linux. Unfortunately "make check" hangs.

linpc1 openmpi-1.7.3a1r29220-Linux.x86_64.32_cc 108
  tail log.make-check.Linux.x86_64.32_cc
  CCLD opal_path_nfs
make[3]: Leaving directory
  `/export2/src/openmpi-1.7/openmpi-1.7.3a1r29220-Linux.x86_64.32_cc/test/util'
make check-TESTS
make[3]: Entering directory
  `/export2/src/openmpi-1.7/openmpi-1.7.3a1r29220-Linux.x86_64.32_cc/test/util'
SUPPORT: OMPI Test Passed: opal_bit_ops(): (70 tests)
PASS: opal_bit_ops
 Failure : Mismatch: input "/home/fd1026", expected:1 got:0

 Failure : Mismatch: input "/home/fdai2368", expected:1 got:0

linpc1 openmpi-1.7.3a1r29220-Linux.x86_64.32_cc 109

It's the same with gcc.

linpc1 openmpi-1.7.3a1r29220-Linux.x86_64.32_gcc 111
  tail log.make-check.Linux.x86_64.32_gcc
  CCLD opal_path_nfs
make[3]: Leaving directory
  `/export2/src/openmpi-1.7/openmpi-1.7.3a1r29220-Linux.x86_64.32_gcc/test/util'
make check-TESTS
make[3]: Entering directory
  `/export2/src/openmpi-1.7/openmpi-1.7.3a1r29220-Linux.x86_64.32_gcc/test/util'
SUPPORT: OMPI Test Passed: opal_bit_ops(): (70 tests)
PASS: opal_bit_ops
 Failure : Mismatch: input "/home/fd1026", expected:1 got:0

 Failure : Mismatch: input "/home/fdai2368", expected:1 got:0

linpc1 openmpi-1.7.3a1r29220-Linux.x86_64.32_gcc 112

I get the following output, when I run the program in gdb.

linpc1 util 127 gdb .libs/opal_path_nfs
GNU gdb (GDB) SUSE (7.3-41.1.2)
Copyright (C) 2011 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law. Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-suse-linux".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>...
Reading symbols from
/export2/src/openmpi-1.7/openmpi-1.7.3a1r29220-Linux.x86_64.32_gcc/test/util/.libs/opal_path_nfs...done.
(gdb) run
Starting program: /export2/src/openmpi-1.7/openmpi-1.7.3a1r29220-Linux.x86_64.32_gcc/test/util/.libs/opal_path_nfs
Missing separate debuginfo for /lib/ld-linux.so.2
Try: zypper install -C "debuginfo(build-id)=39c1043d2fcf5b72a2199cfb765d020b1faeb863"
Missing separate debuginfo for /lib/libdl.so.2
Try: zypper install -C "debuginfo(build-id)=e836358b9da37bddf9adaa7430eb92a0a0b19d16"
Missing separate debuginfo for /lib/librt.so.1
Try: zypper install -C "debuginfo(build-id)=c1cd870bd6083af5996fbb10104d4b65ffde6fd6"
Missing separate debuginfo for /lib/libnsl.so.1
Try: zypper install -C "debuginfo(build-id)=b59a58d3fd5023cd781e4b594313da5933f9886e"
Missing separate debuginfo for /lib/libutil.so.1
Try: zypper install -C "debuginfo(build-id)=9d3744ab88fc1d28542d7aa28a7d16950d09b3a1"
Missing separate debuginfo for /lib/libm.so.6
Try: zypper install -C "debuginfo(build-id)=4ef73322578ad9d7b9bb042f0d8c31aecbd2c52d"
Missing separate debuginfo for /lib/libpthread.so.0
Try: zypper install -C "debuginfo(build-id)=593f40f908f51dd863dc2cf94b9cb76bd0bae3d8"
[Thread debugging using libthread_db enabled]
Missing separate debuginfo for /lib/libc.so.6
Try: zypper install -C "debuginfo(build-id)=782d835f454ecfa3cdd590574b59c139283cf7ea"
Detaching after fork from child process 28585.
sh: opal_path_nfs.out: Permission denied
 Failure : Mismatch: input "/home/fd1026", expected:1 got:0

 Failure : Mismatch: input "/home/fdai2368", expected:1 got:0

I would be grateful, if somebody can fix the problem. Thank you very much
for any help in advance.

Kind regards

Siegmar