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Subject: Re: [OMPI users] errors testing openmpi1.6.5 ----
From: Ralph Castain (rhc_at_[hidden])
Date: 2013-07-24 20:35:10


If you list the /usr/local/openmpi1.6.5/lib directory, do you see the referenced libraries?

On Jul 24, 2013, at 5:09 PM, Yuping Sun <ysun_at_[hidden]> wrote:

> Dear All:
>
> I downloaded openmpi1.5.6 and installed on my linux workstation with the help of NASA engineer. Then I tried to test the openmpi installation, but get the following error message:
>
> [ysun_at_ysunrh mpi]$ which mpiexec
> /usr/local/openmpi1.6.5/bin/mpiexec
> [ysun_at_ysunrh mpi]$ mpiexec utils/MPIcheck/mpicheck
> [ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_paffinity_hwloc: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_carto_auto_detect: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_carto_file: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_shmem_mmap: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_shmem_posix: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24905] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_shmem_sysv: lt_dlerror() returned NULL! (ignored)
> --------------------------------------------------------------------------
> It looks like opal_init failed for some reason; your parallel process is
> likely to abort. There are many reasons that a parallel process can
> fail during opal_init; some of which are due to configuration or
> environment problems. This failure appears to be an internal failure;
> here's some additional information (which may only be relevant to an
> Open MPI developer):
>
> opal_shmem_base_select failed
> --> Returned value -1 instead of OPAL_SUCCESS
> --------------------------------------------------------------------------
> [ysunrh.fdwt.com:24905] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79
> [ysunrh.fdwt.com:24905] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694
>
>
> I also try the use ompi_info to get more information, and it give me a lot error messages and I listed some below:
>
> [ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_osc_pt2pt: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_osc_rdma: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_btl_self: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_btl_sm: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_btl_tcp: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_topo_unity: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_pubsub_orte: lt_dlerror() returned NULL! (ignored)
> [ysunrh.fdwt.com:24920] mca: base: component_find: unable to open /usr/local/openmpi1.6.5/lib/openmpi/mca_dpm_orte: lt_dlerror() returned NULL! (ignored)
> MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.6.5)
> MCA memory: linux (MCA v2.0, API v2.0, Component v1.6.5)
> MCA timer: linux (MCA v2.0, API v2.0, Component v1.6.5)
> MCA installdirs: env (MCA v2.0, API v2.0, Component v1.6.5)
> MCA installdirs: config (MCA v2.0, API v2.0, Component v1.6.5)
> MCA hwloc: hwloc132 (MCA v2.0, API v2.0, Component v1.6.5)
>
>
> Could anyone of you give me some help, and tell me what I need to do to install openmpi correctly or give me some instructions to make it working? Thank you.
>
>
> Yuping Sun
>
> FloDesign Wind Turbine Corp
> 242 Sturbridge Road
> Charlton, MA 01507
> Direct: 508-434-1507
> Cell: 713-456-9420
> ysun_at_[hidden]
> <image001.jpg>
>
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