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Subject: [OMPI users] cannot build openmpi-1.9r28290 on Linux/Solaris
From: Siegmar Gross (Siegmar.Gross_at_[hidden])
Date: 2013-04-05 03:33:33


Hi

today I tried to install openmpi-1.9r28290 and got the following errors.

Solaris 10, Sparc, Sun C 5.12, 32-bit version of openmpi
Solaris 10, x86_64, Sun C 5.12, 32-bit version of openmpi
Solaris 10, Sparc, Sun C 5.12, 64-bit version of openmpi
Solaris 10, x86_64, Sun C 5.12, 64-bit version of openmpi
---------------------------------------------------------

...
  CC topology-solaris.lo
"../../../../../../../openmpi-1.9r28290/opal/mca/hwloc/hwloc152/hwloc/src/topolo
gy-solaris.c", line 226: undefined symbol: binding
"../../../../../../../openmpi-1.9r28290/opal/mca/hwloc/hwloc152/hwloc/src/topolo
gy-solaris.c", line 227: undefined symbol: hwloc_set
"../../../../../../../openmpi-1.9r28290/opal/mca/hwloc/hwloc152/hwloc/src/topolo
gy-solaris.c", line 227: warning: improper pointer/integer combination: arg #1
cc: acomp failed for ../../../../../../../openmpi-1.9r28290/opal/mca/hwloc/hwloc
152/hwloc/src/topology-solaris.c
make[4]: *** [topology-solaris.lo] Error 1
...

openSuSE Linux 12.1, x86_64, Sun C 5.12, 32-bit version of openmpi
openSuSE Linux 12.1, x86_64, Sun C 5.12, 64-bit version of openmpi
------------------------------------------------------------------

...
  PPFC mpi-f08-sizeof.lo
  PPFC mpi-f08.lo
"../../../../../openmpi-1.9r28290/ompi/mpi/fortran/use-mpi-f08/mpi-f08.F90", Lin
e = 1, Column = 1: INTERNAL: Interrupt: Segmentation fault
make[2]: *** [mpi-f08.lo] Error 1
make[2]: Leaving directory `/export2/src/openmpi-1.9/openmpi-1.9-Linux.x86_64.32
_cc/ompi/mpi/fortran/use-mpi-f08'
make[1]: *** [all-recursive] Error 1
...

I could built an older version.

                 Package: Open MPI root_at_linpc1 Distribution
                Open MPI: 1.9r28209
  Open MPI repo revision: r28209
   Open MPI release date: Mar 25, 2013 (nightly snapshot tarball)
                Open RTE: 1.9
  Open RTE repo revision: r28134M
   Open RTE release date: Feb 28, 2013
                    OPAL: 1.9
      OPAL repo revision: r28134M
       OPAL release date: Feb 28, 2013
                 MPI API: 2.1
            Ident string: 1.9r28209
                  Prefix: /usr/local/ompi-java_64_cc
 Configured architecture: x86_64-unknown-linux-gnu
          Configure host: linpc1
           Configured by: root
           Configured on: Tue Mar 26 15:54:59 CET 2013
          Configure host: linpc1
                Built by: root
                Built on: Tue Mar 26 16:31:01 CET 2013
              Built host: linpc1
              C bindings: yes
            C++ bindings: yes
             Fort mpif.h: yes (all)
            Fort use mpi: yes (full: ignore TKR)
       Fort use mpi size: deprecated-ompi-info-value
        Fort use mpi_f08: yes
 Fort mpi_f08 compliance: The mpi_f08 module is available, but due to
limitations in the f95 compiler, does not support the following: array
subsections, ABSTRACT INTERFACE function pointers, Fortran '08-specified
ASYNCHRONOUS behavior, PROCEDUREs, direct passthru (where possible) to
underlying Open MPI's C functionality
  Fort mpi_f08 subarrays: no
           Java bindings: yes
              C compiler: cc
     C compiler absolute: /opt/solstudio12.3/bin/cc
  C compiler family name: SUN
      C compiler version: 0x5120
            C++ compiler: CC
   C++ compiler absolute: /opt/solstudio12.3/bin/CC
           Fort compiler: f95
       Fort compiler abs: /opt/solstudio12.3/bin/f95
         Fort ignore TKR: yes (!$PRAGMA IGNORE_TKR)
   Fort 08 assumed shape: no
      Fort optional args: yes
            Fort BIND(C): yes
            Fort PRIVATE: yes
           Fort ABSTRACT: no
       Fort ASYNCHRONOUS: no
          Fort PROCEDURE: no
 Fort f08 using wrappers: yes
             C profiling: yes
           C++ profiling: yes
   Fort mpif.h profiling: yes
  Fort use mpi profiling: yes
   Fort use mpi_f08 prof: yes
          C++ exceptions: yes
          Thread support: posix (MPI_THREAD_MULTIPLE: yes, OPAL support: yes,
OMPI progress: no, ORTE progress: no, Event lib: no)
           Sparse Groups: no
  Internal debug support: yes
  MPI interface warnings: yes
     MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
         libltdl support: yes
   Heterogeneous support: yes
 mpirun default --prefix: no
         MPI I/O support: yes
       MPI_WTIME support: gettimeofday
     Symbol vis. support: yes
   Host topology support: yes
          MPI extensions:
   FT Checkpoint support: no (checkpoint thread: no)
   C/R Enabled Debugging: no
     VampirTrace support: yes
  MPI_MAX_PROCESSOR_NAME: 256
    MPI_MAX_ERROR_STRING: 256
     MPI_MAX_OBJECT_NAME: 64
        MPI_MAX_INFO_KEY: 36
        MPI_MAX_INFO_VAL: 256
       MPI_MAX_PORT_NAME: 1024
  MPI_MAX_DATAREP_STRING: 128
           MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.9)
               MCA event: libevent2019 (MCA v2.0, API v2.0, Component v1.9)
               MCA hwloc: hwloc152 (MCA v2.0, API v2.0, Component v1.9)
                  MCA if: linux_ipv6 (MCA v2.0, API v2.0, Component v1.9)
                  MCA if: posix_ipv4 (MCA v2.0, API v2.0, Component v1.9)
         MCA installdirs: env (MCA v2.0, API v2.0, Component v1.9)
         MCA installdirs: config (MCA v2.0, API v2.0, Component v1.9)
              MCA memory: linux (MCA v2.0, API v2.0, Component v1.9)
               MCA shmem: mmap (MCA v2.0, API v2.0, Component v1.9)
               MCA shmem: posix (MCA v2.0, API v2.0, Component v1.9)
               MCA shmem: sysv (MCA v2.0, API v2.0, Component v1.9)
               MCA timer: linux (MCA v2.0, API v2.0, Component v1.9)
                 MCA dfs: app (MCA v2.0, API v1.0, Component v1.9)
                 MCA dfs: orted (MCA v2.0, API v1.0, Component v1.9)
                 MCA dfs: test (MCA v2.0, API v1.0, Component v1.9)
              MCA errmgr: default_app (MCA v2.0, API v3.0, Component v1.9)
              MCA errmgr: default_hnp (MCA v2.0, API v3.0, Component v1.9)
              MCA errmgr: default_orted (MCA v2.0, API v3.0, Component v1.9)
                 MCA ess: env (MCA v2.0, API v3.0, Component v1.9)
                 MCA ess: hnp (MCA v2.0, API v3.0, Component v1.9)
                 MCA ess: singleton (MCA v2.0, API v3.0, Component v1.9)
                 MCA ess: slurm (MCA v2.0, API v3.0, Component v1.9)
                 MCA ess: tool (MCA v2.0, API v3.0, Component v1.9)
               MCA filem: raw (MCA v2.0, API v2.0, Component v1.9)
               MCA filem: rsh (MCA v2.0, API v2.0, Component v1.9)
             MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.9)
                 MCA iof: hnp (MCA v2.0, API v2.0, Component v1.9)
                 MCA iof: mr_hnp (MCA v2.0, API v2.0, Component v1.9)
                 MCA iof: mr_orted (MCA v2.0, API v2.0, Component v1.9)
                 MCA iof: orted (MCA v2.0, API v2.0, Component v1.9)
                 MCA iof: tool (MCA v2.0, API v2.0, Component v1.9)
                MCA odls: default (MCA v2.0, API v2.0, Component v1.9)
                 MCA oob: tcp (MCA v2.0, API v2.0, Component v1.9)
                 MCA plm: rsh (MCA v2.0, API v2.0, Component v1.9)
                 MCA plm: slurm (MCA v2.0, API v2.0, Component v1.9)
                 MCA ras: loadleveler (MCA v2.0, API v2.0, Component v1.9)
                 MCA ras: simulator (MCA v2.0, API v2.0, Component v1.9)
                 MCA ras: slurm (MCA v2.0, API v2.0, Component v1.9)
               MCA rmaps: lama (MCA v2.0, API v2.0, Component v1.9)
               MCA rmaps: ppr (MCA v2.0, API v2.0, Component v1.9)
               MCA rmaps: rank_file (MCA v2.0, API v2.0, Component v1.9)
               MCA rmaps: resilient (MCA v2.0, API v2.0, Component v1.9)
               MCA rmaps: round_robin (MCA v2.0, API v2.0, Component v1.9)
               MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.9)
               MCA rmaps: staged (MCA v2.0, API v2.0, Component v1.9)
                 MCA rml: oob (MCA v2.0, API v2.0, Component v1.9)
              MCA routed: binomial (MCA v2.0, API v2.0, Component v1.9)
              MCA routed: debruijn (MCA v2.0, API v2.0, Component v1.9)
              MCA routed: direct (MCA v2.0, API v2.0, Component v1.9)
              MCA routed: radix (MCA v2.0, API v2.0, Component v1.9)
               MCA state: app (MCA v2.0, API v1.0, Component v1.9)
               MCA state: hnp (MCA v2.0, API v1.0, Component v1.9)
               MCA state: novm (MCA v2.0, API v1.0, Component v1.9)
               MCA state: orted (MCA v2.0, API v1.0, Component v1.9)
               MCA state: staged_hnp (MCA v2.0, API v1.0, Component v1.9)
               MCA state: staged_orted (MCA v2.0, API v1.0, Component v1.9)
           MCA allocator: basic (MCA v2.0, API v2.0, Component v1.9)
           MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.9)
                 MCA bml: r2 (MCA v2.0, API v2.0, Component v1.9)
                 MCA btl: self (MCA v2.0, API v2.0, Component v1.9)
                 MCA btl: sm (MCA v2.0, API v2.0, Component v1.9)
                 MCA btl: tcp (MCA v2.0, API v2.0, Component v1.9)
                MCA coll: basic (MCA v2.0, API v2.0, Component v1.9)
                MCA coll: hierarch (MCA v2.0, API v2.0, Component v1.9)
                MCA coll: inter (MCA v2.0, API v2.0, Component v1.9)
                MCA coll: libnbc (MCA v2.0, API v2.0, Component v1.9)
                MCA coll: self (MCA v2.0, API v2.0, Component v1.9)
                MCA coll: sm (MCA v2.0, API v2.0, Component v1.9)
                MCA coll: tuned (MCA v2.0, API v2.0, Component v1.9)
                MCA fbtl: posix (MCA v2.0, API v2.0, Component v1.9)
               MCA fcoll: dynamic (MCA v2.0, API v2.0, Component v1.9)
               MCA fcoll: individual (MCA v2.0, API v2.0, Component v1.9)
               MCA fcoll: static (MCA v2.0, API v2.0, Component v1.9)
               MCA fcoll: two_phase (MCA v2.0, API v2.0, Component v1.9)
               MCA fcoll: ylib (MCA v2.0, API v2.0, Component v1.9)
                  MCA fs: ufs (MCA v2.0, API v2.0, Component v1.9)
                  MCA io: ompio (MCA v2.0, API v2.0, Component v1.9)
                  MCA io: romio (MCA v2.0, API v2.0, Component v1.9)
               MCA mpool: grdma (MCA v2.0, API v2.0, Component v1.9)
               MCA mpool: sm (MCA v2.0, API v2.0, Component v1.9)
                 MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.9)
                 MCA osc: rdma (MCA v2.0, API v2.0, Component v1.9)
                 MCA pml: v (MCA v2.0, API v2.0, Component v1.9)
                 MCA pml: bfo (MCA v2.0, API v2.0, Component v1.9)
                 MCA pml: dr (MCA v2.0, API v2.0, Component v1.9)
                 MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.9)
              MCA rcache: vma (MCA v2.0, API v2.0, Component v1.9)
            MCA sharedfp: dummy (MCA v2.0, API v2.0, Component v1.9)
                MCA topo: unity (MCA v2.0, API v2.0, Component v1.9)

I would be grateful, if somebody can fix the problems. Thank you
very much for any help in advance.

Kind regards

Siegmar