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Subject: Re: [OMPI users] Compiling OpenMPI 1.6.3 for Intel Compiler 10.1 error
From: Mads Boye (mb_at_[hidden])
Date: 2013-02-18 04:46:39


Thank you for leading me towards the compiler. I found out that I was trying to compile against version 10.1 instead of 11.0, this fixed my problem to export the right compiler.

Thank you.

De bedste hilsner / Best regards,

Mads Boye.

> -----Original Message-----
> From: users-bounces_at_[hidden] [mailto:users-bounces_at_[hidden]]
> On Behalf Of Jeff Squyres (jsquyres)
> Sent: 15. februar 2013 14:52
> To: Open MPI Users
> Subject: Re: [OMPI users] Compiling OpenMPI 1.6.3 for Intel Compiler 10.1
> error
>
> This typically means that your Intel C++ compiler installation is borked.
>
> Did you look at config.log to see the specific error? Are you able to compile
> trivial C++ programs with icpc?
>
> Please send all the information listed here:
>
> http://www.open-mpi.org/community/help/
>
>
> On Feb 15, 2013, at 4:44 AM, Mads Boye <mb_at_[hidden]> wrote:
>
> > Hi.
> > I am trying to compile OpenMPi for an Intel Compiler. This is causing me
> some issues.
> >
> > Link for config.txt http://homes.ist.aau.dk/mb/config.txt
> >
> > The ./configure crashes when aligning bool for the C++ compiler:
> > ./configure CC=icc CXX=icpc F77=ifort FC=ifort
> > --prefix=/pack/openmpi-1.6.3-intel
> > ...
> > *** C++ compiler and preprocessor
> > checking whether we are using the GNU C++ compiler... yes checking
> > whether icpc accepts -g... yes checking dependency style of icpc...
> > gcc3 checking how to run the C++ preprocessor... /lib/cpp checking for
> > the C++ compiler vendor... intel checking if icpc supports
> > -finline-functions... yes
> > configure: WARNING: -finline-functions has been added to CXXFLAGS
> > checking if C and C++ are link compatible... yes checking for C++
> > optimization flags... -O3 -DNDEBUG -finline-functions checking size of
> > bool... 0 checking alignment of bool... configure: WARNING: ***
> > Problem running configure test!
> > configure: WARNING: *** See config.log for details.
> > configure: error: *** Cannot continue.
> > mb_at_harald:~/openmpi-1.6.3$
> >
> > here is export:
> > mb_at_harald:~/openmpi-1.6.3$ export
> > declare -x CPATH="/pack/intel_mkl-10.0.4.023/include"
> > declare -x DYLD_LIBRARY_PATH="/pack/ifort-10.1.018/lib:/pack/icc-
> 10.1.018/lib"
> > declare -x FPATH="/pack/intel_mkl-10.0.4.023/include"
> > declare -x HOME="/user/mb"
> > declare -x INCLUDE="/pack/intel_mkl-10.0.4.023/include"
> > declare -x INTEL_LICENSE_FILE="/pack/icc-
> 10.1.018/licenses:/opt/intel/licenses:/user/mb/intel/licenses:/Users/Shared
> /Library/Application Support/Intel/Licenses:/pack/ifort-
> 10.1.018/licenses:/opt/intel/licenses:/user/mb/intel/licenses:/Users/Shared
> /Library/Application Support/Intel/Licenses"
> > declare -x LANG="C"
> > declare -x LANGUAGE="en_US.UTF-8"
> > declare -x LC_ADDRESS="da_DK.UTF-8"
> > declare -x LC_ALL="en_US.UTF-8"
> > declare -x LC_IDENTIFICATION="da_DK.UTF-8"
> > declare -x LC_MEASUREMENT="da_DK.UTF-8"
> > declare -x LC_MONETARY="da_DK.UTF-8"
> > declare -x LC_NAME="da_DK.UTF-8"
> > declare -x LC_NUMERIC="da_DK.UTF-8"
> > declare -x LC_PAPER="da_DK.UTF-8"
> > declare -x LC_TELEPHONE="da_DK.UTF-8"
> > declare -x LC_TIME="da_DK.UTF-8"
> > declare -x LD_LIBRARY_PATH="/pack/intel_mkl-
> 10.0.4.023/lib/em64t:/pack/ifort-10.1.018/lib:/pack/icc-
> 10.1.018/lib:/usr/local/lib:/usr/lib:/lib"
> > declare -x LESSCLOSE="/usr/bin/lesspipe %s %s"
> > declare -x LESSOPEN="| /usr/bin/lesspipe %s"
> > declare -x LIBRARY_PATH="/pack/intel_mkl-10.0.4.023/lib/em64t"
> > declare -x LOGNAME="mb"
> > declare -x
> LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=
> 40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=
> 34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lz
> h=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;3
> 1:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=
> 01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=0
> 1;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;
> 31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:
> *.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01
> ;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;
> 35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mk
> v=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;
> 35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;3
> 5:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl
> =01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ax
> v=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac
> =00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.
> ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.x
> spf=00;36:"
> > declare -x MAIL="/var/mail/mb"
> > declare -x MANPATH="/pack/intel_mkl-10.0.4.023/man:/pack/ifort-
> 10.1.018/man:/pack/icc-10.1.018/man:/pack/slurm/share/man:/"
> > declare -x MKLROOT="/pack/intel_mkl-10.0.4.023"
> > declare -x NLSPATH="/pack/ifort-10.1.018/lib/locale/en_US/%N:/pack/icc-
> 10.1.018/lib/locale/en_US/%N"
> > declare -x OLDPWD="/user/mb"
> > declare -x PATH="/pack/ifort-10.1.018/bin:/pack/icc-
> 10.1.018/bin:/user/mb/bin:/pack/bin/python:/pack/slurm/bin:/pack/openm
> pi-gnu-
> ib/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
> "
> > declare -x PWD="/user/mb/openmpi-1.6.3"
> > declare -x SHELL="/bin/bash"
> > declare -x SHLVL="1"
> > declare -x SSH_CLIENT="192.168.2.5 37213 22"
> > declare -x SSH_CONNECTION="192.168.2.5 37213 192.168.2.6 22"
> > declare -x SSH_TTY="/dev/pts/4"
> > declare -x TERM="xterm"
> > declare -x USER="mb"
> > declare -x XDG_SESSION_COOKIE="9ee4b1c561dd60184f7777020000034e-
> 1360830861.502044-749903926"
> >
> > _______________________________________________
> > users mailing list
> > users_at_[hidden]
> > http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
> --
> Jeff Squyres
> jsquyres_at_[hidden]
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
>
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