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Subject: Re: [OMPI users] qsub error
From: Erik Nelson (nelsonerikd_at_[hidden])
Date: 2013-02-16 12:48:01


yep, runs well now.

On Sat, Feb 16, 2013 at 6:50 AM, Jeff Squyres (jsquyres) <jsquyres_at_[hidden]
> wrote:

> Glad you got it working!
>
> On Feb 15, 2013, at 6:53 PM, Erik Nelson <nelsonerikd_at_[hidden]> wrote:
>
> > I may have deleted any responses to this message. In either case, we
> appear to have fixed the problem
> > by installing a more current version of openmpi.
> >
> >
> > On Thu, Feb 14, 2013 at 2:27 PM, Erik Nelson <nelsonerikd_at_[hidden]>
> wrote:
> >
> > I'm encountering an error using qsub that none of us can figure out. MPI
> C++ programs seem to
> > run fine when executed from the command line, but for some reason when I
> submit them through
> > the queue I get a strange error message ..
> >
> >
> >
> [compute-3-12.local][[58672,1],0][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> > connect() to 2002:8170:6c2f:b:21d:9ff:fefd:7d94 failed: Permission
> denied (13)
> >
> >
> > the compute node 3-12 doesn't matter (the error can generate from any of
> the nodes, and I'm
> > guessing that 3-12 is the parent node here).
> >
> > To check if there was some problem with my own code, I created a simple
> 'hello world' program
> > (see attached files).
> >
> > Again, the program runs fine from the command line but fails in qsub
> with the same sort of error
> > message.
> >
> > I have included (i) the code (ii) the job script for qsub, and (iii) the
> ".o" file from qsub for the
> > "hello world" program.
> >
> > These don't look like MPI errors, but rather some conflict with, maybe,
> secure communication
> > across nodes.
> >
> > Is there something simple I can do to fix this?
> >
> > Thanks, Erik
> >
> > --
> > Erik Nelson
> >
> > Howard Hughes Medical Institute
> > 6001 Forest Park Blvd., Room ND10.124
> > Dallas, Texas 75235-9050
> >
> > p : 214 645 5981
> > f : 214 645 5948
> >
> >
> >
> > --
> > Erik Nelson
> >
> > Howard Hughes Medical Institute
> > 6001 Forest Park Blvd., Room ND10.124
> > Dallas, Texas 75235-9050
> >
> > p : 214 645 5981
> > f : 214 645 5948
> > _______________________________________________
> > users mailing list
> > users_at_[hidden]
> > http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
> --
> Jeff Squyres
> jsquyres_at_[hidden]
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
>
> _______________________________________________
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> users_at_[hidden]
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>

-- 
Erik Nelson
Howard Hughes Medical Institute
6001 Forest Park Blvd., Room ND10.124
Dallas, Texas 75235-9050
p : 214 645 5981
f : 214 645 5948