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Subject: Re: [OMPI users] Compiling OpenMPI 1.6.3 for Intel Compiler 10.1 error
From: Mads Boye (mb_at_[hidden])
Date: 2013-02-15 04:44:38


Hi.
I am trying to compile OpenMPi for an Intel Compiler. This is causing me some issues.

Link for config.txt http://homes.ist.aau.dk/mb/config.txt

The ./configure crashes when aligning bool for the C++ compiler:
./configure CC=icc CXX=icpc F77=ifort FC=ifort --prefix=/pack/openmpi-1.6.3-intel
...
*** C++ compiler and preprocessor
checking whether we are using the GNU C++ compiler... yes
checking whether icpc accepts -g... yes
checking dependency style of icpc... gcc3
checking how to run the C++ preprocessor... /lib/cpp
checking for the C++ compiler vendor... intel
checking if icpc supports -finline-functions... yes
configure: WARNING: -finline-functions has been added to CXXFLAGS
checking if C and C++ are link compatible... yes
checking for C++ optimization flags... -O3 -DNDEBUG -finline-functions
checking size of bool... 0
checking alignment of bool... configure: WARNING: *** Problem running configure test!
configure: WARNING: *** See config.log for details.
configure: error: *** Cannot continue.
mb_at_harald:~/openmpi-1.6.3$<mailto:mb_at_harald:~/openmpi-1.6.3$>

here is export:
mb_at_harald:~/openmpi-1.6.3$<mailto:mb_at_harald:~/openmpi-1.6.3$> export
declare -x CPATH="/pack/intel_mkl-10.0.4.023/include"
declare -x DYLD_LIBRARY_PATH="/pack/ifort-10.1.018/lib:/pack/icc-10.1.018/lib"
declare -x FPATH="/pack/intel_mkl-10.0.4.023/include"
declare -x HOME="/user/mb"
declare -x INCLUDE="/pack/intel_mkl-10.0.4.023/include"
declare -x INTEL_LICENSE_FILE="/pack/icc-10.1.018/licenses:/opt/intel/licenses:/user/mb/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses:/pack/ifort-10.1.018/licenses:/opt/intel/licenses:/user/mb/intel/licenses:/Users/Shared/Library/Application Support/Intel/Licenses"
declare -x LANG="C"
declare -x LANGUAGE="en_US.UTF-8"
declare -x LC_ADDRESS="da_DK.UTF-8"
declare -x LC_ALL="en_US.UTF-8"
declare -x LC_IDENTIFICATION="da_DK.UTF-8"
declare -x LC_MEASUREMENT="da_DK.UTF-8"
declare -x LC_MONETARY="da_DK.UTF-8"
declare -x LC_NAME="da_DK.UTF-8"
declare -x LC_NUMERIC="da_DK.UTF-8"
declare -x LC_PAPER="da_DK.UTF-8"
declare -x LC_TELEPHONE="da_DK.UTF-8"
declare -x LC_TIME="da_DK.UTF-8"
declare -x LD_LIBRARY_PATH="/pack/intel_mkl-10.0.4.023/lib/em64t:/pack/ifort-10.1.018/lib:/pack/icc-10.1.018/lib:/usr/local/lib:/usr/lib:/lib"
declare -x LESSCLOSE="/usr/bin/lesspipe %s %s"
declare -x LESSOPEN="| /usr/bin/lesspipe %s"
declare -x LIBRARY_PATH="/pack/intel_mkl-10.0.4.023/lib/em64t"
declare -x LOGNAME="mb"
declare -x LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:"
declare -x MAIL="/var/mail/mb"
declare -x MANPATH="/pack/intel_mkl-10.0.4.023/man:/pack/ifort-10.1.018/man:/pack/icc-10.1.018/man:/pack/slurm/share/man:/"
declare -x MKLROOT="/pack/intel_mkl-10.0.4.023"
declare -x NLSPATH="/pack/ifort-10.1.018/lib/locale/en_US/%N:/pack/icc-10.1.018/lib/locale/en_US/%N"
declare -x OLDPWD="/user/mb"
declare -x PATH="/pack/ifort-10.1.018/bin:/pack/icc-10.1.018/bin:/user/mb/bin:/pack/bin/python:/pack/slurm/bin:/pack/openmpi-gnu-ib/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games"
declare -x PWD="/user/mb/openmpi-1.6.3"
declare -x SHELL="/bin/bash"
declare -x SHLVL="1"
declare -x SSH_CLIENT="192.168.2.5 37213 22"
declare -x SSH_CONNECTION="192.168.2.5 37213 192.168.2.6 22"
declare -x SSH_TTY="/dev/pts/4"
declare -x TERM="xterm"
declare -x USER="mb"
declare -x XDG_SESSION_COOKIE="9ee4b1c561dd60184f7777020000034e-1360830861.502044-749903926"