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Subject: Re: [OMPI users] Building 1.6.3 on OS X 10.8
From: Beatty, Daniel D CIV NAVAIR, 474300D (daniel.beatty_at_[hidden])
Date: 2013-02-11 15:41:16


Hi Jeff,
The Intel+PPC is one issue. However, even on Intel, there tends to be a
distinction between Intel environments going from Xeon to Core iX
environments. While Objective-C/C/C++ handle this well, the Fortran
compilers have given me a different story over the years. It tends to be
the case that not all of the 64 bit compilations are not the same,
especially with the Fortran compilers. The LLVM compiler for Objective C
with C based MPI constructs tends to be more consistent. However, if I have
to reference legacy Fortran code, then I could be in trouble. I am hoping
that in my next development cycle to make an architecture that insulates
this effect, regardless of language.

The second issue of the host files has to do with a defunct capability for
example Xgrid. It used to be that various Xgrid sites were reasonable
sources of information with regards to MPI and one could get the recipes to
equip either a cluster or grid environment. Examples included TenGrid
(http:/tengrid.com) , MacResearch ( http://www.macresearch.org), etc. I
hope that the new amount of data being collected at the open MPI site will
facilitate both the mobile and data center variety of MPI alike. The beauty
of mobility is the feature that the Mac, Windows, and potentially iOS, and
Andriod platforms bring to the concept of MPI. The cost is keeping track of
when such devices come and go from such grids.

I may had a misarticulated question with regards to the marshaling
capabilities of MPI. It may have improved since I last used MPI. I know
that there are standards bodies for MPI itself. Therefore, I will need to
check to see what changes have occurred.

Daniel Beatty, Ph.D.
Computer Scientist, Detonation Sciences Branch
Code 474300D
1 Administration Circle M/S 1109
China Lake, CA 93555
daniel.beatty_at_[hidden]
(LandLine) (760)939-7097
(iPhone) (806)438-6620

On 2/11/13 10:37 AM, "Jeff Squyres (jsquyres)" <jsquyres_at_[hidden]> wrote:

> On Feb 11, 2013, at 1:11 PM, "Beatty, Daniel D CIV NAVAIR, 474300D"
> <daniel.beatty_at_[hidden]> wrote:
>
>> There are two issues that have concerned me. One is universal capabilities,
>> namely ensuring that the library allows the same results for binaries in both
>> any of their universal compiled forms.
>
> Not sure what you mean here -- are you referring to Intel+PPC "universal" OS X
> binaries?
>
>> Also, the linking of the MPI host files and marshaling capabilities. I am
>> hoping to address these issues in design before I get to implementation.
>> Naturally, there is a matter of tinkering that goes back and forth. So I
>> will need some help here. Is there a standard for MPI currently in existence
>> that enables such a thing?
>
> Er... I'm also not sure what you mean here, either. :-(
>
> What exactly do you mean by "linking of MPI host files"? Host files are just
> text files; they're not involved with the (run-time or compile-time) linker at
> all.
>
> What marshaling capabilities are you referring to, MPI datatypes?
>
>> If there is a standard, is there a way to accredit such a standard for OSX if
>> it gets built for universal capabilities? What is the standards body for
>> MPI to facilitate this? If such a thing is built, how do we contribute back
>> in a standards consistent way?
>>
>>
>>
>> V/R,
>>
>> Daniel Beatty, Ph.D.
>> Computer Scientist, Detonation Sciences Branch
>> Code 474300D
>> 1 Administration Circle M/S 1109
>> China Lake, CA 93555
>> daniel.beatty_at_[hidden]
>> (LandLine) (760)939-7097
>> (iPhone) (806)438-6620
>>
>>
>>
>> On 2/11/13 8:09 AM, "Mark Bolstad" <the.render.dude_at_[hidden]> wrote:
>>
>> It's not just one plugin, it was about 6 of them. I just deleted the error
>> message from the others as I believed that opal_init was the problem.
>>
>> However, I have done a full build multiple times and have blown away all the
>> plugins and other remnants of the build and install and get the same results
>> every time.
>>
>> Here's the output from running ompi_info (same result with or w/o OPAL_PREFIX
>> are the same; LD_LIBRARY_PATH set; path points to both bin and lib directory
>> ):
>>
>> [bolstadm-lm3:~/papillon/build/src] bolstadm% ompi_info
>> Package: Open MPI bolstadm_at_bolstadm-lm3 Distribution
>> Open MPI: 1.6.3
>> Open MPI SVN revision: r27472
>> Open MPI release date: Oct 24, 2012
>> Open RTE: 1.6.3
>> Open RTE SVN revision: r27472
>> Open RTE release date: Oct 24, 2012
>> OPAL: 1.6.3
>> OPAL SVN revision: r27472
>> OPAL release date: Oct 24, 2012
>> MPI API: 2.1
>> Ident string: 1.6.3
>> Prefix:
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3
>> Configured architecture: x86_64-apple-darwin12.2.1
>> Configure host: bolstadm-lm3
>> Configured by: bolstadm
>> Configured on: Sun Feb 10 19:09:36 EST 2013
>> Configure host: bolstadm-lm3
>> Built by: bolstadm
>> Built on: Sun Feb 10 19:16:52 EST 2013
>> Built host: bolstadm-lm3
>> C bindings: yes
>> C++ bindings: yes
>> Fortran77 bindings: no
>> Fortran90 bindings: no
>> Fortran90 bindings size: na
>> C compiler: gcc
>> C compiler absolute: /usr/bin/gcc
>> C compiler family name: GNU
>> C compiler version: 4.2.1
>> C++ compiler: g++
>> C++ compiler absolute: /usr/bin/g++
>> Fortran77 compiler: gfortran
>> Fortran77 compiler abs: /usr/bin/gfortran
>> Fortran90 compiler: none
>> Fortran90 compiler abs: none
>> C profiling: yes
>> C++ profiling: yes
>> Fortran77 profiling: no
>> Fortran90 profiling: no
>> C++ exceptions: no
>> Thread support: posix (MPI_THREAD_MULTIPLE: no, progress: no)
>> Sparse Groups: no
>> Internal debug support: no
>> MPI interface warnings: no
>> MPI parameter check: runtime
>> Memory profiling support: no
>> Memory debugging support: no
>> libltdl support: yes
>> Heterogeneous support: no
>> mpirun default --prefix: no
>> MPI I/O support: yes
>> MPI_WTIME support: gettimeofday
>> Symbol vis. support: yes
>> Host topology support: yes
>> MPI extensions: affinity example
>> FT Checkpoint support: no (checkpoint thread: no)
>> VampirTrace support: yes
>> MPI_MAX_PROCESSOR_NAME: 256
>> MPI_MAX_ERROR_STRING: 256
>> MPI_MAX_OBJECT_NAME: 64
>> MPI_MAX_INFO_KEY: 36
>> MPI_MAX_INFO_VAL: 256
>> MPI_MAX_PORT_NAME: 1024
>> MPI_MAX_DATAREP_STRING: 128
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_paffinity_hwloc: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_carto_auto_detect: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_carto_file: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_shmem_mmap: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_shmem_posix: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_shmem_sysv: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_maffinity_first_use: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_maffinity_hwloc: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_sysinfo_darwin: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_errmgr_default: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_grpcomm_bad: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_grpcomm_basic: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_ess_env: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_ess_hnp: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_ess_singleton: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_ess_slave: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_ess_slurm: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_ess_slurmd: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_ess_tool: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_notifier_command: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_notifier_syslog: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_oob_tcp: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_odls_default: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_iof_hnp: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_iof_orted: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_iof_tool: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_ras_cm: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_ras_slurm: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_rmaps_load_balance: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_rmaps_rank_file: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_rmaps_resilient: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_rmaps_round_robin: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_rmaps_seq: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_rmaps_topo: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_rml_oob: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_routed_binomial: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_routed_cm: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_routed_direct: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_routed_linear: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_routed_radix: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_routed_slave: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_plm_rsh: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_plm_slurm: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_filem_rsh: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_allocator_basic: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_allocator_bucket: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_coll_basic: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_coll_hierarch: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_coll_inter: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_coll_self: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_coll_sm: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_coll_sync: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_coll_tuned: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_io_romio: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_rcache_vma: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_mpool_fake: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_mpool_rdma: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_mpool_sm: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_pml_bfo: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_pml_cm: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_pml_csum: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_pml_ob1: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_pml_v: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_osc_pt2pt: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_osc_rdma: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_btl_self: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_btl_sm: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_btl_tcp: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_topo_unity: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_pubsub_orte: lt_dlerror() returned NULL! (ignored)
>> [bolstadm-lm3:86426] mca: base: component_find: unable to open
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_dpm_orte: lt_dlerror() returned NULL! (ignored)
>> MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.6.3)
>> MCA timer: darwin (MCA v2.0, API v2.0, Component v1.6.3)
>> MCA installdirs: env (MCA v2.0, API v2.0, Component v1.6.3)
>> MCA installdirs: config (MCA v2.0, API v2.0, Component v1.6.3)
>> MCA hwloc: hwloc132 (MCA v2.0, API v2.0, Component v1.6.3)
>>
>> And here's an example of a plugin reported as an error:
>> [bolstadm-lm3:~/papillon/build/src] bolstadm% l
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_paffinity_hwloc*
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_paffinity_hwloc.a
>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openmp
>> i/mca_paffinity_hwloc.la <http://mca_paffinity_hwloc.la> *
>>
>> On Mon, Feb 11, 2013 at 8:27 AM, Jeff Squyres (jsquyres) <jsquyres_at_[hidden]>
>> wrote:
>> That's very idd; I cant think of why that would happen offhand. I build and
>> run all the time on ML with no problems. Can you deleted that plugin and run
>> ok?
>>
>> Sent from my phone. No type good.
>>
>> On Feb 10, 2013, at 10:22 PM, "Mark Bolstad" <the.render.dude_at_[hidden]>
>> wrote:
>>
>>> I having some difficulties with building/running 1.6.3 on Mountain Lion
>>> (10.8.2). I build with no errors and install into a prefix directory. I get
>>> the following errors:
>>> ...
>>> [bolstadm-lm3:38486] mca: base: component_find: unable to open
>>> /Users/bolstadm/papillon/build/macosx-x86_64/Release/openmpi-1.6.3/lib/openm
>>> pi/mca_shmem_sysv: lt_dlerror() returned NULL! (ignored)
>>> --------------------------------------------------------------------------
>>> It looks like opal_init failed for some reason; your parallel process is
>>> likely to abort. There are many reasons that a parallel process can
>>> fail during opal_init; some of which are due to configuration or
>>> environment problems. This failure appears to be an internal failure;
>>> here's some additional information (which may only be relevant to an
>>> Open MPI developer):
>>>
>>> opal_shmem_base_select failed
>>> --> Returned value -1 instead of OPAL_SUCCESS
>>> --------------------------------------------------------------------------
>>> [bolstadm-lm3:38486] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file
>>> runtime/orte_init.c at line 79
>>> [bolstadm-lm3:38486] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file
>>> orterun.c at line 694
>>>
>>> I've fiddled with LD_LIBRARY_PATH, DYLD_LIBRARY_PATH, OPAL_PREFIX, in
>>> combination and separately, and none of these seem to have much effect.
>>>
>>> So, I decided to try a straight build. The only option was
>>> --disable-mpi-f77. It installed into /usr/local. There is no other mpi
>>> version installed on the system, and I still get the same errors.
>>>
>>> However, I did install the version from MacPorts (also 1.6.3), and it works
>>> correctly.
>>>
>>> I would appreciate if anyone had some insight into building on OS X 10.8.
>>>
>>> Mark
>>>
>>> _______________________________________________
>>> users mailing list
>>> users_at_[hidden]
>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>> _______________________________________________
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>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>>
>> _______________________________________________
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>> _______________________________________________
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>



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