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Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2 with OpenMPI
From: #YEO JINGJIE# (JYEO1_at_[hidden])
Date: 2013-01-26 22:32:45


Hi Jeff,

Sorry the original error info was lost along the way, I'm terribly new to linux and I am trying to compile OMPI and to run a program, LAMMPS using the command:

/usr/lib64/openmpi/bin/mpirun -n 16 /opt/lammps-21Jan13/lmp_linux < zigzag.in

And I received the errors:

 [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file ess_hnp_module.c at line 194
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
  orte_plm_base_select failed
  --> Returned value Not found (-13) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
[NTU-2:24127] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file runtime/orte_init.c at line 128
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
  orte_ess_set_name failed
  --> Returned value Not found (-13) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
[NTU-2:24127] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file orterun.c at line 616

I have attached the output for "ompi_info --all" in this email. Any advise and guidance is greatly appreciated, thank you!

Regards,
Jingjie Yeo
Ph.D. Student
School of Mechanical and Aerospace Engineering
Nanyang Technological University, Singapore

________________________________________
From: users-bounces_at_[hidden] [users-bounces_at_[hidden]] on behalf of Jeff Squyres (jsquyres) [jsquyres_at_[hidden]]
Sent: Saturday, 26 January, 2013 9:51:43 PM
To: Open MPI Users
Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2 with OpenMPI

Can you provide more information? You really haven't said *what* the problem is that is occurring (even in your followup emails to Ralph). Without such information, it is very hard for us to guess what is wrong.

Please send all the information listed here:

    http://www.open-mpi.org/community/help/

On Jan 25, 2013, at 8:51 PM, #YEO JINGJIE# <JYEO1_at_[hidden]>
 wrote:

> I tried to follow the installation instructions over here:
>
> http://amusecode.org/doc/install/install-prerequisites-redhat.html
>
> And I am using bash and yum.
>
> Regards,
> Jingjie Yeo
> Ph.D. Student
> School of Mechanical and Aerospace Engineering
> Nanyang Technological University, Singapore
> _______________________________________________
> users mailing list
> users_at_[hidden]
> http://www.open-mpi.org/mailman/listinfo.cgi/users

--
Jeff Squyres
jsquyres_at_[hidden]
For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/
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