Open MPI logo

Open MPI User's Mailing List Archives

  |   Home   |   Support   |   FAQ   |   all Open MPI User's mailing list

Subject: Re: [OMPI users] Open-mpi running issue and bug
From: Jeff Squyres (jsquyres) (jsquyres_at_[hidden])
Date: 2013-01-07 12:36:21


It sounds like something is wrong with your download -- the official Open MPI 1.6.3 tarball includes config/install-sh.

Are you getting the 1.6.3 tarball from http://www.open-mpi.org/software/ompi/v1.6/? Are you expanding it on a networked filesystem, perchance? And if so, is the time synchronized between your client machine and the network filesystem server?

On Jan 4, 2013, at 3:08 AM, Edge Edge <edge_diners_at_[hidden]> wrote:

> Hi,
>
> Thanks for your fast reply.
> I'm very appreciate it.
>
> It shown the following info when I issue:
> ./configure
>
> configure: error: cannot find install-sh, install.sh, or shtool in config "."/config
>
> I was download openmpi-1.6.3.tar.gz and unzip it.
>
> Thanks and looking forward to hear from you.
>
> best regards
> Edge
>
> From: Ralph Castain <rhc_at_[hidden]>
> To: Edge Edge <edge_diners_at_[hidden]>; Open MPI Users <users_at_[hidden]>
> Sent: Friday, January 4, 2013 11:53 AM
> Subject: Re: [OMPI users] Open-mpi running issue and bug
>
> If you are building from a tarball, you don't need nor want to run autogen. All you want to do is run ./configure.
>
> If you attempt to run autogen, you'll have to install all the required tools - including an appropriate libtool. Unless you are adding a component to OMPI, you're better off not doing so.
>
>
> On Jan 3, 2013, at 7:19 PM, Edge Edge <edge_diners_at_[hidden]> wrote:
>
>> Hi,
>>
>> When I issue the following command as shown in the info listed (http://www.open-mpi.org/community/help/):
>> [home_at_edge openmpi-1.6.3]$mpirun --bynode --hostfile my_hostfile.txt --tag-output ompi_info -v ompi full --parsable
>> [home_at_edge openmpi-1.6.3]$ --------------------------------------------------------------------------
>> It looks like opal_init failed for some reason; your parallel process is
>> likely to abort. There are many reasons that a parallel process can
>> fail during opal_init; some of which are due to configuration or
>> environment problems. This failure appears to be an internal failure;
>> here's some additional information (which may only be relevant to an
>> Open MPI developer):
>>
>> opal_shmem_base_select failed
>> --> Returned value -1 instead of OPAL_SUCCESS
>> --------------------------------------------------------------------------
>> [home_at_edge:77658] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79
>> [home_at_edge:77658] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694
>>
>> I was downloading "openmpi-1.6.3".
>> If I issue the following command in order to install openmpi-1.6.3.
>> It gives me the following log info after I issue, ./autogen.sh
>> log file:
>> *** Running GNU tools
>> [Running] autom4te --language=m4sh ompi_get_version.m4sh -o ompi_get_version.sh
>> [Running] libtoolize --automake --copy --ltdl
>>
>> -------------------------------------------------------------------------
>> It seems that the execution of "libtoolize --automake --copy --ltdl" has failed. See above for
>> the specific error message that caused it to abort.
>> -------------------------------------------------------------------------
>>
>> error log file:
>> configure.in:2125: installing `confdb/config.guess'
>> configure.in:2125: installing `confdb/config.sub'
>> configure.in:210: installing `confdb/install-sh'
>> configure.in:210: installing `confdb/missing'
>> adio/ad_bgl/Makefile.am: installing `confdb/depcomp'
>> configure.in:96: installing `config/compile'
>> configure.in:34: installing `config/config.guess'
>> configure.in:34: installing `config/config.sub'
>> configure.in:8: installing `config/install-sh'
>> configure.in:8: installing `config/missing'
>> rfg/Makefile.am: installing `config/depcomp'
>> configure.in:10: installing `config/config.guess'
>> configure.in:10: installing `config/config.sub'
>> configure.in:11: installing `config/install-sh'
>> configure.in:11: installing `config/missing'
>> otfauxlib/Makefile.am: installing `config/depcomp'
>> libtoolize: `COPYING.LIB' not found in `/usr/share/libtool/libltdl'
>>
>> Thanks and looking forward to hear from you.
>>
>> best regards
>> Edge
>>
>> From: Jeff Squyres (jsquyres) <jsquyres_at_[hidden]>
>> To: Open MPI Users <users_at_[hidden]>
>> Cc: Edge Edge <edge_diners_at_[hidden]>
>> Sent: Sunday, December 30, 2012 2:07 AM
>> Subject: Re: [OMPI users] Open-mpi running issue and bug
>>
>> Please sent all the info listed here:
>>
>> http://www.open-mpi.org/community/help/
>>
>>
>> On Dec 28, 2012, at 11:42 AM, Ralph Castain <rhc_at_[hidden]>
>> wrote:
>>
>> > What version of OMPI are you using? How was it configured?
>> >
>> >
>> > On Dec 28, 2012, at 2:16 AM, Edge Edge <edge_diners_at_[hidden]> wrote:
>> >
>> >> Hi,
>> >>
>> >> Currently I was trying to run mpirun to improve the performance of my running.
>> >> However it keeps on showing the following bug:
>> >>
>> >> --------------------------------------------------------------------------
>> >> It looks like opal_init failed for some reason; your parallel process is
>> >> likely to abort. There are many reasons that a parallel process can
>> >> fail during opal_init; some of which are due to configuration or
>> >> environment problems. This failure appears to be an internal failure;
>> >> here's some additional information (which may only be relevant to an
>> >> Open MPI developer):
>> >>
>> >> opal_shmem_base_select failed
>> >> --> Returned value -1 instead of OPAL_SUCCESS
>> >> --------------------------------------------------------------------------
>> >> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79
>> >> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694
>> >> make: *** [sample-1.fa] Error 255
>> >>
>> >> Can I know how to solve this bug?
>> >> I got try to google around but I still fail to find related answer.
>> >>
>> >> Below is the spec of my server:
>> >> Linux home 2.6.32-71.el6.x86_64 #1 SMP Wed Sep 1 01:33:01 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
>> >>
>> >> Hope it is useful for you in order to solve the bug.
>> >>
>> >> Thanks.
>> >>
>> >>
>> >> best regards
>> >> Edge
>> >>
>> >>
>> >> _______________________________________________
>> >> users mailing list
>> >> users_at_[hidden]
>> >> http://www.open-mpi.org/mailman/listinfo.cgi/users
>> >
>> > _______________________________________________
>> > users mailing list
>> > users_at_[hidden]
>> > http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>>
>>
>> _______________________________________________
>> users mailing list
>> users_at_[hidden]
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
>
> _______________________________________________
> users mailing list
> users_at_[hidden]
> http://www.open-mpi.org/mailman/listinfo.cgi/users

-- 
Jeff Squyres
jsquyres_at_[hidden]
For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/