Hi,
Thanks for your fast reply.
I'm very appreciate it.
It shown the following info when I issue:
./configure
configure: error: cannot find install-sh, install.sh, or shtool in config "."/config
I was download openmpi-1.6.3.tar.gz and unzip it.
Thanks and looking forward to hear from you.
best regards
Edge
________________________________
From: Ralph Castain <rhc_at_[hidden]>
To: Edge Edge <edge_diners_at_[hidden]>; Open MPI Users <users_at_[hidden]>
Sent: Friday, January 4, 2013 11:53 AM
Subject: Re: [OMPI users] Open-mpi running issue and bug
If you are building from a tarball, you don't need nor want to run autogen. All you want to do is run ./configure.
If you attempt to run autogen, you'll have to install all the required tools - including an appropriate libtool. Unless you are adding a component to OMPI, you're better off not doing so.
On Jan 3, 2013, at 7:19 PM, Edge Edge <edge_diners_at_[hidden]> wrote:
Hi,
>
>
>When I issue the following command as shown in the info listed (http://www.open-mpi.org/community/help/):
>[home_at_edge openmpi-1.6.3]$mpirun --bynode --hostfile my_hostfile.txt --tag-output ompi_info -v ompi full --parsable
>[home_at_edge openmpi-1.6.3]$ --------------------------------------------------------------------------
>
>It looks like opal_init failed for some reason; your parallel process is
>likely to abort. There are many reasons that a parallel process can
>fail during opal_init; some of which are due to configuration or
>environment problems. This failure appears to be an internal failure;
>here's some additional information (which may only be relevant to an
>Open MPI developer):
>
>
> opal_shmem_base_select failed
> --> Returned value -1 instead of OPAL_SUCCESS
>--------------------------------------------------------------------------
>[home_at_edge:77658] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79
>[home_at_edge:77658] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694
>
>
>I was downloading "openmpi-1.6.3".
>If I issue the following command in order to install openmpi-1.6.3.
>It gives me the following log info after I issue, ./autogen.sh
>log file:
>*** Running GNU tools
>[Running] autom4te --language=m4sh ompi_get_version.m4sh -o ompi_get_version.sh
>[Running] libtoolize --automake --copy --ltdl
>
>
>-------------------------------------------------------------------------
>It seems that the execution of "libtoolize --automake --copy --ltdl" has failed. See above for
>the specific error message that caused it to abort.
>-------------------------------------------------------------------------
>
>
>error log file:
>configure.in:2125: installing `confdb/config.guess'
>configure.in:2125: installing `confdb/config.sub'
>configure.in:210: installing `confdb/install-sh'
>configure.in:210: installing `confdb/missing'
>adio/ad_bgl/Makefile.am: installing `confdb/depcomp'
>configure.in:96: installing `config/compile'
>configure.in:34: installing `config/config.guess'
>configure.in:34: installing `config/config.sub'
>configure.in:8: installing `config/install-sh'
>configure.in:8: installing `config/missing'
>rfg/Makefile.am: installing `config/depcomp'
>configure.in:10: installing `config/config.guess'
>configure.in:10: installing `config/config.sub'
>configure.in:11: installing `config/install-sh'
>configure.in:11: installing `config/missing'
>otfauxlib/Makefile.am: installing `config/depcomp'
>libtoolize: `COPYING.LIB' not found in `/usr/share/libtool/libltdl'
>
>
>Thanks and looking forward to hear from you.
>
>
>best regards
>Edge
>
>
>
>________________________________
> From: Jeff Squyres (jsquyres) <jsquyres_at_[hidden]>
>To: Open MPI Users <users_at_[hidden]>
>Cc: Edge Edge <edge_diners_at_[hidden]>
>Sent: Sunday, December 30, 2012 2:07 AM
>Subject: Re: [OMPI users] Open-mpi running issue and bug
>
>Please sent all the info listed here:
>
> http://www.open-mpi.org/community/help/
>
>
>On Dec 28, 2012, at 11:42 AM, Ralph Castain <rhc_at_[hidden]>
>wrote:
>
>> What version of OMPI are you using? How was it configured?
>>
>>
>> On Dec 28, 2012, at 2:16 AM, Edge Edge <edge_diners_at_[hidden]> wrote:
>>
>>> Hi,
>>>
>>> Currently I was trying to run mpirun to improve the performance of my running.
>>> However it keeps on showing the following bug:
>>>
>>> --------------------------------------------------------------------------
>>> It looks like opal_init failed for some reason; your parallel process is
>>> likely to abort. There are many reasons that a parallel
process can
>>> fail during opal_init; some of which are due to configuration or
>>> environment problems. This failure appears to be an internal failure;
>>> here's some additional information (which may only be relevant to an
>>> Open MPI developer):
>>>
>>> opal_shmem_base_select failed
>>> --> Returned value -1 instead of OPAL_SUCCESS
>>> --------------------------------------------------------------------------
>>> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79
>>> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694
>>> make: *** [sample-1.fa] Error 255
>>>
>>> Can I know how to solve this bug?
>>> I got try to google around but I still fail to find related answer.
>>>
>>> Below is the spec of my server:
>>>
Linux home 2.6.32-71.el6.x86_64 #1 SMP Wed Sep 1 01:33:01 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
>>>
>>> Hope it is useful for you in order to solve the bug.
>>>
>>> Thanks.
>>>
>>>
>>> best regards
>>> Edge
>>>
>>>
>>> _______________________________________________
>>> users mailing list
>>> users_at_[hidden]
>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>> _______________________________________________
>> users mailing list
>> users_at_[hidden]
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
>
>_______________________________________________
>users mailing list
>users_at_[hidden]
>http://www.open-mpi.org/mailman/listinfo.cgi/users
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