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Subject: Re: [OMPI users] Open-mpi running issue and bug
From: Edge Edge (edge_diners_at_[hidden])
Date: 2013-01-04 03:08:21


Hi, Thanks for your fast reply. I'm very appreciate it. It shown the following info when I issue: ./configure configure: error: cannot find install-sh, install.sh, or shtool in config "."/config I was download openmpi-1.6.3.tar.gz and unzip it. Thanks and looking forward to hear from you. best regards Edge ________________________________ From: Ralph Castain <rhc_at_[hidden]> To: Edge Edge <edge_diners_at_[hidden]>; Open MPI Users <users_at_[hidden]> Sent: Friday, January 4, 2013 11:53 AM Subject: Re: [OMPI users] Open-mpi running issue and bug If you are building from a tarball, you don't need nor want to run autogen. All you want to do is run ./configure. If you attempt to run autogen, you'll have to install all the required tools - including an appropriate libtool. Unless you are adding a component to OMPI, you're better off not doing so. On Jan 3, 2013, at 7:19 PM, Edge Edge <edge_diners_at_[hidden]> wrote: Hi, > > >When I issue the following command as shown in the info listed (http://www.open-mpi.org/community/help/): >[home_at_edge openmpi-1.6.3]$mpirun --bynode --hostfile my_hostfile.txt --tag-output ompi_info -v ompi full --parsable  >[home_at_edge openmpi-1.6.3]$ -------------------------------------------------------------------------- > >It looks like opal_init failed for some reason; your parallel process is >likely to abort.  There are many reasons that a parallel process can >fail during opal_init; some of which are due to configuration or >environment problems.  This failure appears to be an internal failure; >here's some additional information (which may only be relevant to an >Open MPI developer): > > >  opal_shmem_base_select failed >  --> Returned value -1 instead of OPAL_SUCCESS >-------------------------------------------------------------------------- >[home_at_edge:77658] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79 >[home_at_edge:77658] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694 > > >I was downloading "openmpi-1.6.3". >If I issue the following command in order to install openmpi-1.6.3. >It gives me the following log info after I issue, ./autogen.sh >log file: >*** Running GNU tools >[Running] autom4te --language=m4sh ompi_get_version.m4sh -o ompi_get_version.sh >[Running] libtoolize --automake --copy --ltdl > > >------------------------------------------------------------------------- >It seems that the execution of "libtoolize --automake --copy --ltdl" has failed.  See above for >the specific error message that caused it to abort. >------------------------------------------------------------------------- > > >error log file: >configure.in:2125: installing `confdb/config.guess' >configure.in:2125: installing `confdb/config.sub' >configure.in:210: installing `confdb/install-sh' >configure.in:210: installing `confdb/missing' >adio/ad_bgl/Makefile.am: installing `confdb/depcomp' >configure.in:96: installing `config/compile' >configure.in:34: installing `config/config.guess' >configure.in:34: installing `config/config.sub' >configure.in:8: installing `config/install-sh' >configure.in:8: installing `config/missing' >rfg/Makefile.am: installing `config/depcomp' >configure.in:10: installing `config/config.guess' >configure.in:10: installing `config/config.sub' >configure.in:11: installing `config/install-sh' >configure.in:11: installing `config/missing' >otfauxlib/Makefile.am: installing `config/depcomp' >libtoolize: `COPYING.LIB' not found in `/usr/share/libtool/libltdl' > > >Thanks and looking forward to hear from you. > > >best regards >Edge > > > >________________________________ > From: Jeff Squyres (jsquyres) <jsquyres_at_[hidden]> >To: Open MPI Users <users_at_[hidden]> >Cc: Edge Edge <edge_diners_at_[hidden]> >Sent: Sunday, December 30, 2012 2:07 AM >Subject: Re: [OMPI users] Open-mpi running issue and bug > >Please sent all the info listed here: > >    http://www.open-mpi.org/community/help/ > > >On Dec 28, 2012, at 11:42 AM, Ralph Castain <rhc_at_[hidden]> >wrote: > >> What version of OMPI are you using? How was it configured? >> >> >> On Dec 28, 2012, at 2:16 AM, Edge Edge <edge_diners_at_[hidden]> wrote: >> >>> Hi, >>> >>> Currently I was trying to run mpirun to improve the performance of my running. >>> However it keeps on showing the following bug: >>> >>> -------------------------------------------------------------------------- >>> It looks like opal_init failed for some reason; your parallel process is >>> likely to abort.  There are many reasons that a parallel process can >>> fail during opal_init; some of which are due to configuration or >>> environment problems.  This failure appears to be an internal failure; >>> here's some additional information (which may only be relevant to an >>> Open MPI developer): >>> >>>  opal_shmem_base_select failed >>>  --> Returned value -1 instead of OPAL_SUCCESS >>> -------------------------------------------------------------------------- >>> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79 >>> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694 >>> make: *** [sample-1.fa] Error 255 >>> >>> Can I know how to solve this bug? >>> I got try to google around but I still fail to find related answer. >>> >>> Below is the spec of my server: >>> Linux home 2.6.32-71.el6.x86_64 #1 SMP Wed Sep 1 01:33:01 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux >>> >>> Hope it is useful for you in order to solve the bug. >>> >>> Thanks. >>> >>> >>> best regards >>> Edge >>> >>> >>> _______________________________________________ >>> users mailing list >>> users_at_[hidden] >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> _______________________________________________ >> users mailing list >> users_at_[hidden] >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > >_______________________________________________ >users mailing list >users_at_[hidden] >http://www.open-mpi.org/mailman/listinfo.cgi/users