Hi,
When I issue the following command as shown in the info listed (http://www.open-mpi.org/community/help/):
[home_at_edge openmpi-1.6.3]$mpirun --bynode --hostfile my_hostfile.txt --tag-output ompi_info -v ompi full --parsable
[home_at_edge openmpi-1.6.3]$ --------------------------------------------------------------------------
It looks like opal_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during opal_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
opal_shmem_base_select failed
--> Returned value -1 instead of OPAL_SUCCESS
--------------------------------------------------------------------------
[home_at_edge:77658] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79
[home_at_edge:77658] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694
I was downloading "openmpi-1.6.3".
If I issue the following command in order to install openmpi-1.6.3.
It gives me the following log info after I issue, ./autogen.sh
log file:
*** Running GNU tools
[Running] autom4te --language=m4sh ompi_get_version.m4sh -o ompi_get_version.sh
[Running] libtoolize --automake --copy --ltdl
-------------------------------------------------------------------------
It seems that the execution of "libtoolize --automake --copy --ltdl" has failed. See above for
the specific error message that caused it to abort.
-------------------------------------------------------------------------
error log file:
configure.in:2125: installing `confdb/config.guess'
configure.in:2125: installing `confdb/config.sub'
configure.in:210: installing `confdb/install-sh'
configure.in:210: installing `confdb/missing'
adio/ad_bgl/Makefile.am: installing `confdb/depcomp'
configure.in:96: installing `config/compile'
configure.in:34: installing `config/config.guess'
configure.in:34: installing `config/config.sub'
configure.in:8: installing `config/install-sh'
configure.in:8: installing `config/missing'
rfg/Makefile.am: installing `config/depcomp'
configure.in:10: installing `config/config.guess'
configure.in:10: installing `config/config.sub'
configure.in:11: installing `config/install-sh'
configure.in:11: installing `config/missing'
otfauxlib/Makefile.am: installing `config/depcomp'
libtoolize: `COPYING.LIB' not found in `/usr/share/libtool/libltdl'
Thanks and looking forward to hear from you.
best regards
Edge
________________________________
From: Jeff Squyres (jsquyres) <jsquyres_at_[hidden]>
To: Open MPI Users <users_at_[hidden]>
Cc: Edge Edge <edge_diners_at_[hidden]>
Sent: Sunday, December 30, 2012 2:07 AM
Subject: Re: [OMPI users] Open-mpi running issue and bug
Please sent all the info listed here:
http://www.open-mpi.org/community/help/
On Dec 28, 2012, at 11:42 AM, Ralph Castain <rhc_at_[hidden]>
wrote:
> What version of OMPI are you using? How was it configured?
>
>
> On Dec 28, 2012, at 2:16 AM, Edge Edge <edge_diners_at_[hidden]> wrote:
>
>> Hi,
>>
>> Currently I was trying to run mpirun to improve the performance of my running.
>> However it keeps on showing the following bug:
>>
>> --------------------------------------------------------------------------
>> It looks like opal_init failed for some reason; your parallel process is
>> likely to abort. There are many reasons that a parallel process can
>> fail during opal_init; some of which are due to configuration or
>> environment problems. This failure appears to be an internal failure;
>> here's some additional information (which may only be relevant to an
>> Open MPI developer):
>>
>> opal_shmem_base_select failed
>> --> Returned value -1 instead of OPAL_SUCCESS
>> --------------------------------------------------------------------------
>> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79
>> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694
>> make: *** [sample-1.fa] Error 255
>>
>> Can I know how to solve this bug?
>> I got try to google around but I still fail to find related answer.
>>
>> Below is the spec of my server:
>> Linux home 2.6.32-71.el6.x86_64 #1 SMP Wed Sep 1 01:33:01 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
>>
>> Hope it is useful for you in order to solve the bug.
>>
>> Thanks.
>>
>>
>> best regards
>> Edge
>>
>>
>> _______________________________________________
>> users mailing list
>> users_at_[hidden]
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
> _______________________________________________
> users mailing list
> users_at_[hidden]
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