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Subject: Re: [OMPI users] Open-mpi running issue and bug
From: Edge Edge (edge_diners_at_[hidden])
Date: 2013-01-03 22:19:28


Hi, When I issue the following command as shown in the info listed (http://www.open-mpi.org/community/help/): [home_at_edge openmpi-1.6.3]$mpirun --bynode --hostfile my_hostfile.txt --tag-output ompi_info -v ompi full --parsable  [home_at_edge openmpi-1.6.3]$ -------------------------------------------------------------------------- It looks like opal_init failed for some reason; your parallel process is likely to abort.  There are many reasons that a parallel process can fail during opal_init; some of which are due to configuration or environment problems.  This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer):   opal_shmem_base_select failed   --> Returned value -1 instead of OPAL_SUCCESS -------------------------------------------------------------------------- [home_at_edge:77658] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79 [home_at_edge:77658] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694 I was downloading "openmpi-1.6.3". If I issue the following command in order to install openmpi-1.6.3. It gives me the following log info after I issue, ./autogen.sh log file: *** Running GNU tools [Running] autom4te --language=m4sh ompi_get_version.m4sh -o ompi_get_version.sh [Running] libtoolize --automake --copy --ltdl ------------------------------------------------------------------------- It seems that the execution of "libtoolize --automake --copy --ltdl" has failed.  See above for the specific error message that caused it to abort. ------------------------------------------------------------------------- error log file: configure.in:2125: installing `confdb/config.guess' configure.in:2125: installing `confdb/config.sub' configure.in:210: installing `confdb/install-sh' configure.in:210: installing `confdb/missing' adio/ad_bgl/Makefile.am: installing `confdb/depcomp' configure.in:96: installing `config/compile' configure.in:34: installing `config/config.guess' configure.in:34: installing `config/config.sub' configure.in:8: installing `config/install-sh' configure.in:8: installing `config/missing' rfg/Makefile.am: installing `config/depcomp' configure.in:10: installing `config/config.guess' configure.in:10: installing `config/config.sub' configure.in:11: installing `config/install-sh' configure.in:11: installing `config/missing' otfauxlib/Makefile.am: installing `config/depcomp' libtoolize: `COPYING.LIB' not found in `/usr/share/libtool/libltdl' Thanks and looking forward to hear from you. best regards Edge ________________________________ From: Jeff Squyres (jsquyres) <jsquyres_at_[hidden]> To: Open MPI Users <users_at_[hidden]> Cc: Edge Edge <edge_diners_at_[hidden]> Sent: Sunday, December 30, 2012 2:07 AM Subject: Re: [OMPI users] Open-mpi running issue and bug Please sent all the info listed here:     http://www.open-mpi.org/community/help/ On Dec 28, 2012, at 11:42 AM, Ralph Castain <rhc_at_[hidden]> wrote: > What version of OMPI are you using? How was it configured? > > > On Dec 28, 2012, at 2:16 AM, Edge Edge <edge_diners_at_[hidden]> wrote: > >> Hi, >> >> Currently I was trying to run mpirun to improve the performance of my running. >> However it keeps on showing the following bug: >> >> -------------------------------------------------------------------------- >> It looks like opal_init failed for some reason; your parallel process is >> likely to abort.  There are many reasons that a parallel process can >> fail during opal_init; some of which are due to configuration or >> environment problems.  This failure appears to be an internal failure; >> here's some additional information (which may only be relevant to an >> Open MPI developer): >> >>  opal_shmem_base_select failed >>  --> Returned value -1 instead of OPAL_SUCCESS >> -------------------------------------------------------------------------- >> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79 >> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694 >> make: *** [sample-1.fa] Error 255 >> >> Can I know how to solve this bug? >> I got try to google around but I still fail to find related answer. >> >> Below is the spec of my server: >> Linux home 2.6.32-71.el6.x86_64 #1 SMP Wed Sep 1 01:33:01 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux >> >> Hope it is useful for you in order to solve the bug. >> >> Thanks. >> >> >> best regards >> Edge >> >> >> _______________________________________________ >> users mailing list >> users_at_[hidden] >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > _______________________________________________ > users mailing list > users_at_[hidden] > http://www.open-mpi.org/mailman/listinfo.cgi/users