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Subject: Re: [OMPI users] Serveral issue in mpirun on macosx 10.8.2
From: Ralph Castain (rhc_at_[hidden])
Date: 2012-12-12 09:52:08


Well, this

> LD_LIBRARY_PATH = /usr/local/bin

certainly isn't right - it needs to be /usr/local/lib, based on the output below. What prefix did you provide to configure OMPI?

On Dec 12, 2012, at 4:11 AM, Extreme Programming <dmasondev_at_[hidden]> wrote:

> Hi, I have just installed openmpi 1.7 on my macosx 10.8.2 because i need java bining.
> Installation works fine, compilation too but when i executed the "mpirun -n 4 myfile" i get this error:
>
> MacBook-Pro:Desktop rainmaker$ mpirun -n 4 a.out
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_ess_slurmd: dlopen(/usr/local/lib/openmpi/mca_ess_slurmd.so, 9): Symbol not found: _orte_jmap_t_class
> Referenced from: /usr/local/lib/openmpi/mca_ess_slurmd.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_ess_slurmd.so (ignored)
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_errmgr_default: dlopen(/usr/local/lib/openmpi/mca_errmgr_default.so, 9): Symbol not found: _orte_errmgr_base_error_abort
> Referenced from: /usr/local/lib/openmpi/mca_errmgr_default.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_errmgr_default.so (ignored)
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_routed_cm: dlopen(/usr/local/lib/openmpi/mca_routed_cm.so, 9): Symbol not found: _orte_message_event_t_class
> Referenced from: /usr/local/lib/openmpi/mca_routed_cm.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_routed_cm.so (ignored)
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_routed_linear: dlopen(/usr/local/lib/openmpi/mca_routed_linear.so, 9): Symbol not found: _orte_message_event_t_class
> Referenced from: /usr/local/lib/openmpi/mca_routed_linear.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_routed_linear.so (ignored)
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_grpcomm_basic: dlopen(/usr/local/lib/openmpi/mca_grpcomm_basic.so, 9): Symbol not found: _opal_profile
> Referenced from: /usr/local/lib/openmpi/mca_grpcomm_basic.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_grpcomm_basic.so (ignored)
> [MacBook-Pro.local:18481] mca: base: component_find: unable to open /usr/local/lib/openmpi/mca_grpcomm_hier: dlopen(/usr/local/lib/openmpi/mca_grpcomm_hier.so, 9): Symbol not found: _orte_daemon_cmd_processor
> Referenced from: /usr/local/lib/openmpi/mca_grpcomm_hier.so
> Expected in: flat namespace
> in /usr/local/lib/openmpi/mca_grpcomm_hier.so (ignored)
> [MacBook-Pro:18481] *** Process received signal ***
> [MacBook-Pro:18481] Signal: Segmentation fault: 11 (11)
> [MacBook-Pro:18481] Signal code: Address not mapped (1)
> [MacBook-Pro:18481] Failing at address: 0x14
> [MacBook-Pro:18481] [ 0] 2 libsystem_c.dylib 0x00007fff820308ea _sigtramp + 26
> [MacBook-Pro:18481] [ 1] 3 ??? 0x00007fff59070458 0x0 + 140734687020120
> [MacBook-Pro:18481] [ 2] 4 libopen-rte.5.dylib 0x0000000106bd7658 orte_rmaps_base_map_job + 984
> [MacBook-Pro:18481] [ 3] 5 libopen-rte.5.dylib 0x0000000106c1a0a0 opal_libevent2019_event_base_loop + 1888
> [MacBook-Pro:18481] [ 4] 6 mpirun 0x0000000106b916e1 orterun + 5137
> [MacBook-Pro:18481] [ 5] 7 mpirun 0x0000000106b90290 main + 32
> [MacBook-Pro:18481] [ 6] 8 libdyld.dylib 0x00007fff8ac597e1 start + 0
> [MacBook-Pro:18481] [ 7] 9 ??? 0x0000000000000004 0x0 + 4
> [MacBook-Pro:18481] *** End of error message ***
> Segmentation fault: 11
>
>
> for resolving it, i have exported the LD_LIBRARY_PATH = /usr/local/bin and I used the same configuration of my last openmpi's installation.
> Please help me to solve this issue.
>
> Thank you very much.
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