My gcc 4.7.2 build appears to be ignoring the one in /usr/lib64 and using the one in its own install tree:
/usr/projects/hpcsoft/moonlight/gcc/4.7.2/lib64/libgfortran.so.3
-david
--
David Gunter
HPC-3: Infrastructure Team
Los Alamos National Laboratory
On Dec 6, 2012, at 2:50 PM, Paul Hatton wrote:
> Ahh, it's looking in /usr/lib64 and finding libgfortran.so.3 which is older than the one expected by gcc 4.7 (system gcc is 4.4.6). Looking at my gcc installation I don't have any shared libraries in there, just static ones.
>
> David - if you don't mind a slight diversion, where is your libgfortran.so.3? Does your system have one in /usr/lib64 (assuming you're on a 64-bit system) or in /usr/projects/hpcsoft/moonlight/gcc/4.7.2/somewhere?
>
> I'll have a play with my setup as well. Should have spotted this myself.
>
> Thanks for your help
>
> --
> Paul Hatton
> High Performance Computing and Visualisation Specialist
> IT Services, The University of Birmingham
> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton
> [Service Manager, Birmingham Environment for Academic Research]
> [Also Technical Director, IBM Visual and Spatial Technology Centre]
>
>
>> -----Original Message-----
>> From: users-bounces_at_[hidden] [mailto:users-bounces_at_[hidden]] On
>> Behalf Of Jeff Squyres
>> Sent: 06 December 2012 21:30
>> To: Open MPI Users
>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc
>> 4.7.2
>>
>> It looks like your gfortran compiler is broken...?
>>
>> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND
>> (selected_int_kind(9))
>> configure:53507: gfortran -o conftest conftestf.f90
>> configure:53514: $? = 0
>> configure:53554: ./conftest
>> ./conftest: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not
>> found (required by ./conftest)
>> configure:53561: $? = 1
>>
>>
>>
>> On Dec 6, 2012, at 1:22 PM, Paul Hatton wrote:
>>
>>> failed one attached.
>>>
>>> --
>>> Paul Hatton
>>> High Performance Computing and Visualisation Specialist
>>> IT Services, The University of Birmingham
>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton
>>> [Service Manager, Birmingham Environment for Academic Research]
>>> [Also Technical Director, IBM Visual and Spatial Technology Centre]
>>>
>>>
>>>> -----Original Message-----
>>>> From: users-bounces_at_[hidden] [mailto:users-bounces_at_[hidden]]
>> On
>>>> Behalf Of Jeff Squyres
>>>> Sent: 06 December 2012 21:17
>>>> To: Open MPI Users
>>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc
>>>> 4.7.2
>>>>
>>>> This does not appear to be the right config.log -- the test in
>> question
>>>> passed:
>>>>
>>>> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND
>>>> (selected_int_kind(9))
>>>> configure:53507: gfortran -o conftest conftestf.f90
>>>> configure:53514: $? = 0
>>>>
>>>>
>>>>
>>>> On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote:
>>>>
>>>>> Thanks. zip-ed config.log attached
>>>>>
>>>>> --
>>>>> Paul Hatton
>>>>> High Performance Computing and Visualisation Specialist
>>>>> IT Services, The University of Birmingham
>>>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton
>>>>> [Service Manager, Birmingham Environment for Academic Research]
>>>>> [Also Technical Director, IBM Visual and Spatial Technology Centre]
>>>>>
>>>>>
>>>>>> -----Original Message-----
>>>>>> From: users-bounces_at_[hidden] [mailto:users-bounces_at_open-
>> mpi.org]
>>>> On
>>>>>> Behalf Of Jeff Squyres
>>>>>> Sent: 06 December 2012 20:54
>>>>>> To: Open MPI Users
>>>>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc
>>>>>> 4.7.2
>>>>>>
>>>>>> I have not tested with gfortran 4.7.2.
>>>>>>
>>>>>> Can you send the config.log file? (please compress)
>>>>>>
>>>>>>
>>>>>> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote:
>>>>>>
>>>>>>> I've searched the FAQ but not come up with anything about this
>> ...
>>>>>> with OpenMPI 1.6.3 and gcc 4.7.2, when I
>>>>>>>
>>>>>>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \
>>>>>>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \
>>>>>>> --with-tm=/gpfs/sysapps/torque/4.1.2 \
>>>>>>> --with-openib \
>>>>>>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log
>>>>>>>
>>>>>>> configure fails with
>>>>>>>
>>>>>>> checking Fortran 90 kind of MPI_INTEGER_KIND
>>>>>> (selected_int_kind(9))...
>>>>>>> configure: error: Could not determine kind of
>>>>>> selected_int_kind(MPI_INTEGER_KIND)
>>>>>>>
>>>>>>> Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel
>>>>>> 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is
>>>>>> 4.4.6
>>>>>>>
>>>>>>> I've attached the output from the configure command.
>>>>>>>
>>>>>>> Thanks
>>>>>>>
>>>>>>> --
>>>>>>> Paul Hatton
>>>>>>> High Performance Computing and Visualisation Specialist
>>>>>>> IT Services, The University of Birmingham
>>>>>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton
>>>>>>> [Service Manager, Birmingham Environment for Academic Research]
>>>>>>> [Also Technical Director, IBM Visual and Spatial Technology
>> Centre]
>>>>>>>
>>>>>>> <configure-
>>>>>>
>> 12_12_06_19h48m.log>_______________________________________________
>>>>>>> users mailing list
>>>>>>> users_at_[hidden]
>>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Jeff Squyres
>>>>>> jsquyres_at_[hidden]
>>>>>> For corporate legal information go to:
>>>>>> http://www.cisco.com/web/about/doing_business/legal/cri/
>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>> users mailing list
>>>>>> users_at_[hidden]
>>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>>>
>>>>>
>>>>>
>>>>
>> ***********************************************************************
>>>> ******
>>>>> **
>>>> **
>>>>> ** WARNING: This email contains an attachment of a very suspicious
>>>> type. **
>>>>> ** You are urged NOT to open this attachment unless you are
>>>> absolutely **
>>>>> ** sure it is legitimate. Opening this attachment may cause
>>>> irreparable **
>>>>> ** damage to your computer and your files. If you have any
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>>>> **
>>>>> ** about the validity of this message, PLEASE SEEK HELP BEFORE
>>>> OPENING IT. **
>>>>> **
>>>> **
>>>>> ** This warning was added by the IU Computer Science Dept. mail
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>>>>>
>>>>>
>>>>> <config.zip>_______________________________________________
>>>>> users mailing list
>>>>> users_at_[hidden]
>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>>
>>>>
>>>> --
>>>> Jeff Squyres
>>>> jsquyres_at_[hidden]
>>>> For corporate legal information go to:
>>>> http://www.cisco.com/web/about/doing_business/legal/cri/
>>>>
>>>>
>>>> _______________________________________________
>>>> users mailing list
>>>> users_at_[hidden]
>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>
>>>
>>>
>> ***********************************************************************
>> ******
>>> **
>> **
>>> ** WARNING: This email contains an attachment of a very suspicious
>> type. **
>>> ** You are urged NOT to open this attachment unless you are
>> absolutely **
>>> ** sure it is legitimate. Opening this attachment may cause
>> irreparable **
>>> ** damage to your computer and your files. If you have any questions
>> **
>>> ** about the validity of this message, PLEASE SEEK HELP BEFORE
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>>> **
>> **
>>> ** This warning was added by the IU Computer Science Dept. mail
>> scanner. **
>>>
>> ***********************************************************************
>> ******
>>>
>>>
>>> <config.zip>_______________________________________________
>>> users mailing list
>>> users_at_[hidden]
>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>>
>> --
>> Jeff Squyres
>> jsquyres_at_[hidden]
>> For corporate legal information go to:
>> http://www.cisco.com/web/about/doing_business/legal/cri/
>>
>>
>> _______________________________________________
>> users mailing list
>> users_at_[hidden]
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
> _______________________________________________
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