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Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc 4.7.2
From: Jeff Squyres (jsquyres_at_[hidden])
Date: 2012-12-06 16:29:48


It looks like your gfortran compiler is broken...?

configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9))
configure:53507: gfortran -o conftest conftestf.f90
configure:53514: $? = 0
configure:53554: ./conftest
./conftest: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not found (required by ./conftest)
configure:53561: $? = 1

On Dec 6, 2012, at 1:22 PM, Paul Hatton wrote:

> failed one attached.
>
> --
> Paul Hatton
> High Performance Computing and Visualisation Specialist
> IT Services, The University of Birmingham
> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton
> [Service Manager, Birmingham Environment for Academic Research]
> [Also Technical Director, IBM Visual and Spatial Technology Centre]
>
>
>> -----Original Message-----
>> From: users-bounces_at_[hidden] [mailto:users-bounces_at_[hidden]] On
>> Behalf Of Jeff Squyres
>> Sent: 06 December 2012 21:17
>> To: Open MPI Users
>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc
>> 4.7.2
>>
>> This does not appear to be the right config.log -- the test in question
>> passed:
>>
>> configure:53489: checking Fortran 90 kind of MPI_INTEGER_KIND
>> (selected_int_kind(9))
>> configure:53507: gfortran -o conftest conftestf.f90
>> configure:53514: $? = 0
>>
>>
>>
>> On Dec 6, 2012, at 1:11 PM, Paul Hatton wrote:
>>
>>> Thanks. zip-ed config.log attached
>>>
>>> --
>>> Paul Hatton
>>> High Performance Computing and Visualisation Specialist
>>> IT Services, The University of Birmingham
>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton
>>> [Service Manager, Birmingham Environment for Academic Research]
>>> [Also Technical Director, IBM Visual and Spatial Technology Centre]
>>>
>>>
>>>> -----Original Message-----
>>>> From: users-bounces_at_[hidden] [mailto:users-bounces_at_[hidden]]
>> On
>>>> Behalf Of Jeff Squyres
>>>> Sent: 06 December 2012 20:54
>>>> To: Open MPI Users
>>>> Subject: Re: [OMPI users] error configuring OpenMPI 1.6.3 with gcc
>>>> 4.7.2
>>>>
>>>> I have not tested with gfortran 4.7.2.
>>>>
>>>> Can you send the config.log file? (please compress)
>>>>
>>>>
>>>> On Dec 6, 2012, at 12:42 PM, Paul Hatton wrote:
>>>>
>>>>> I've searched the FAQ but not come up with anything about this ...
>>>> with OpenMPI 1.6.3 and gcc 4.7.2, when I
>>>>>
>>>>> ./configure --prefix=/gpfs/apps/openmpi/1.6.3/gcc_4.7.2-tm-ib \
>>>>> F77=gfortran FC=gfortran CC=gcc CXX=c++ \
>>>>> --with-tm=/gpfs/sysapps/torque/4.1.2 \
>>>>> --with-openib \
>>>>> 2>&1|tee ../logs/configure-`date +%y_%m_%d_%Hh%Mm`.log
>>>>>
>>>>> configure fails with
>>>>>
>>>>> checking Fortran 90 kind of MPI_INTEGER_KIND
>>>> (selected_int_kind(9))...
>>>>> configure: error: Could not determine kind of
>>>> selected_int_kind(MPI_INTEGER_KIND)
>>>>>
>>>>> Has anyone built 1.6.3 with gcc 4.7.2? It build fine with Intel
>>>> 2013.0.079 and also the system (Scientific Linux 6.3) gcc which is
>>>> 4.4.6
>>>>>
>>>>> I've attached the output from the configure command.
>>>>>
>>>>> Thanks
>>>>>
>>>>> --
>>>>> Paul Hatton
>>>>> High Performance Computing and Visualisation Specialist
>>>>> IT Services, The University of Birmingham
>>>>> Ph: 0121-414-3994 Mob: 07785-977340 Skype: P.S.Hatton
>>>>> [Service Manager, Birmingham Environment for Academic Research]
>>>>> [Also Technical Director, IBM Visual and Spatial Technology Centre]
>>>>>
>>>>> <configure-
>>>> 12_12_06_19h48m.log>_______________________________________________
>>>>> users mailing list
>>>>> users_at_[hidden]
>>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>>
>>>>
>>>> --
>>>> Jeff Squyres
>>>> jsquyres_at_[hidden]
>>>> For corporate legal information go to:
>>>> http://www.cisco.com/web/about/doing_business/legal/cri/
>>>>
>>>>
>>>> _______________________________________________
>>>> users mailing list
>>>> users_at_[hidden]
>>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>
>>>
>>>
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>>> <config.zip>_______________________________________________
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>>
>>
>> --
>> Jeff Squyres
>> jsquyres_at_[hidden]
>> For corporate legal information go to:
>> http://www.cisco.com/web/about/doing_business/legal/cri/
>>
>>
>> _______________________________________________
>> users mailing list
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>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
> *****************************************************************************
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> ** WARNING: This email contains an attachment of a very suspicious type. **
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> <config.zip>_______________________________________________
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-- 
Jeff Squyres
jsquyres_at_[hidden]
For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/