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Subject: Re: [OMPI users] Open-mx issue with ompi 1.6.1
From: Douglas Eadline (deadline_at_[hidden])
Date: 2012-09-10 14:37:12


I got no response for this question. Is Open-MX
no longer supported in Open MPI? Or is there someplace else
I should submit this information? I also attached my ompi_info
and omx_info output

--
Doug
> I built open-mpi 1.6.1 using the open-mx libraries.
> This worked previously and now I get the following
> error. Here is my system:
>
> kernel:  2.6.32-279.5.1.el6.x86_64
> open-mx: 1.5.2
>
> BTW, open-mx worked previously with open-mpi and the current
> version works with mpich2
>
>
> $  mpiexec -np 8 -machinefile machines cpi
> Process 0 on limulus
> FatalError: Failed to lookup peer by addr, driver replied Bad file
> descriptor
> cpi: ../omx_misc.c:89: omx__ioctl_errno_to_return_checked: Assertion `0'
> failed.
> [limulus:04448] *** Process received signal ***
> [limulus:04448] Signal: Aborted (6)
> [limulus:04448] Signal code:  (-6)
> [limulus:04448] [ 0] /lib64/libpthread.so.0() [0x3324e0f500]
> [limulus:04448] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x33246328a5]
> [limulus:04448] [ 2] /lib64/libc.so.6(abort+0x175) [0x3324634085]
> [limulus:04448] [ 3] /lib64/libc.so.6() [0x332462ba1e]
> [limulus:04448] [ 4] /lib64/libc.so.6(__assert_perror_fail+0)
> [0x332462bae0]
> [limulus:04448] [ 5]
> /usr/open-mx/lib/libopen-mx.so.0(omx__ioctl_errno_to_return_checked+0x197)
> [0x7fb587418b37]
> [limulus:04448] [ 6]
> /usr/open-mx/lib/libopen-mx.so.0(omx__peer_addr_to_index+0x55)
> [0x7fb58741a5d5]
> [limulus:04448] [ 7] /usr/open-mx/lib/libopen-mx.so.0(+0xdc7a)
> [0x7fb587419c7a]
> [limulus:04448] [ 8] /usr/open-mx/lib/libopen-mx.so.0(omx_connect+0x8c)
> [0x7fb58741a27c]
> [limulus:04448] [ 9] /usr/open-mx/lib/libopen-mx.so.0(mx_connect+0x15)
> [0x7fb587425865]
> [limulus:04448] [10]
> /opt/mpi/openmpi-gnu4/lib64/libmpi.so.1(mca_btl_mx_proc_connect+0x5e)
> [0x7fb5876fe40e]
> [limulus:04448] [11]
> /opt/mpi/openmpi-gnu4/lib64/libmpi.so.1(mca_btl_mx_send+0x2d4)
> [0x7fb5876fbd94]
> [limulus:04448] [12]
> /opt/mpi/openmpi-gnu4/lib64/libmpi.so.1(mca_pml_ob1_send_request_start_prepare+0xcb)
> [0x7fb58777d6fb]
> [limulus:04448] [13]
> /opt/mpi/openmpi-gnu4/lib64/libmpi.so.1(mca_pml_ob1_isend+0x4cb)
> [0x7fb58777509b]
> [limulus:04448] [14]
> /opt/mpi/openmpi-gnu4/lib64/libmpi.so.1(ompi_coll_tuned_bcast_intra_generic+0x37b)
> [0x7fb58770b55b]
> [limulus:04448] [15]
> /opt/mpi/openmpi-gnu4/lib64/libmpi.so.1(ompi_coll_tuned_bcast_intra_binomial+0xd8)
> [0x7fb58770b8b8]
> [limulus:04448] [16]
> /opt/mpi/openmpi-gnu4/lib64/libmpi.so.1(ompi_coll_tuned_bcast_intra_dec_fixed+0xcc)
> [0x7fb587702d8c]
> [limulus:04448] [17]
> /opt/mpi/openmpi-gnu4/lib64/libmpi.so.1(mca_coll_sync_bcast+0x78)
> [0x7fb587712e88]
> [limulus:04448] [18]
> /opt/mpi/openmpi-gnu4/lib64/libmpi.so.1(MPI_Bcast+0x130) [0x7fb5876ce1b0]
> [limulus:04448] [19] cpi(main+0x10b) [0x400cc4]
> [limulus:04448] [20] /lib64/libc.so.6(__libc_start_main+0xfd)
> [0x332461ecdd]
> [limulus:04448] [21] cpi() [0x400ac9]
> [limulus:04448] *** End of error message ***
> Process 2 on limulus
> Process 4 on limulus
> Process 6 on limulus
> Process 1 on n0
> Process 7 on n0
> Process 3 on n0
> Process 5 on n0
> --------------------------------------------------------------------------
> mpiexec noticed that process rank 0 with PID 4448 on node limulus exited
> on signal 6 (Aborted).
> --------------------------------------------------------------------------
>
[root_at_limulus ~]# ompi_info
                 Package: Open MPI deadline_at_limulus Distribution
                Open MPI: 1.6.1
   Open MPI SVN revision: r27106
   Open MPI release date: Aug 22, 2012
                Open RTE: 1.6.1
   Open RTE SVN revision: r27106
   Open RTE release date: Aug 22, 2012
                    OPAL: 1.6.1
       OPAL SVN revision: r27106
       OPAL release date: Aug 22, 2012
                 MPI API: 2.1
            Ident string: 1.6.1
                  Prefix: /opt/mpi/openmpi-gnu4-1.6.1
 Configured architecture: x86_64-unknown-linux-gnu
          Configure host: limulus
           Configured by: deadline
           Configured on: Wed Sep  5 15:03:09 EDT 2012
          Configure host: limulus
                Built by: deadline
                Built on: Wed Sep  5 15:21:19 EDT 2012
              Built host: limulus
              C bindings: yes
            C++ bindings: yes
      Fortran77 bindings: yes (all)
      Fortran90 bindings: yes
 Fortran90 bindings size: small
              C compiler: gcc
     C compiler absolute: /usr/bin/gcc
  C compiler family name: GNU
      C compiler version: 4.4.6
            C++ compiler: g++
   C++ compiler absolute: /usr/bin/g++
      Fortran77 compiler: gfortran
  Fortran77 compiler abs: /usr/bin/gfortran
      Fortran90 compiler: /usr/bin/gfortran
  Fortran90 compiler abs:
             C profiling: yes
           C++ profiling: yes
     Fortran77 profiling: yes
     Fortran90 profiling: yes
          C++ exceptions: no
          Thread support: posix (MPI_THREAD_MULTIPLE: no, progress: no)
           Sparse Groups: no
  Internal debug support: no
  MPI interface warnings: no
     MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
         libltdl support: yes
   Heterogeneous support: no
 mpirun default --prefix: no
         MPI I/O support: yes
       MPI_WTIME support: gettimeofday
     Symbol vis. support: yes
   Host topology support: yes
          MPI extensions: affinity example
   FT Checkpoint support: no (checkpoint thread: no)
     VampirTrace support: yes
  MPI_MAX_PROCESSOR_NAME: 256
    MPI_MAX_ERROR_STRING: 256
     MPI_MAX_OBJECT_NAME: 64
        MPI_MAX_INFO_KEY: 36
        MPI_MAX_INFO_VAL: 256
       MPI_MAX_PORT_NAME: 1024
  MPI_MAX_DATAREP_STRING: 128
           MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.6.1)
              MCA memory: linux (MCA v2.0, API v2.0, Component v1.6.1)
           MCA paffinity: hwloc (MCA v2.0, API v2.0, Component v1.6.1)
               MCA carto: auto_detect (MCA v2.0, API v2.0, Component v1.6.1)
               MCA carto: file (MCA v2.0, API v2.0, Component v1.6.1)
               MCA shmem: mmap (MCA v2.0, API v2.0, Component v1.6.1)
               MCA shmem: posix (MCA v2.0, API v2.0, Component v1.6.1)
               MCA shmem: sysv (MCA v2.0, API v2.0, Component v1.6.1)
           MCA maffinity: first_use (MCA v2.0, API v2.0, Component v1.6.1)
           MCA maffinity: hwloc (MCA v2.0, API v2.0, Component v1.6.1)
               MCA timer: linux (MCA v2.0, API v2.0, Component v1.6.1)
         MCA installdirs: env (MCA v2.0, API v2.0, Component v1.6.1)
         MCA installdirs: config (MCA v2.0, API v2.0, Component v1.6.1)
             MCA sysinfo: linux (MCA v2.0, API v2.0, Component v1.6.1)
               MCA hwloc: hwloc132 (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA dpm: orte (MCA v2.0, API v2.0, Component v1.6.1)
              MCA pubsub: orte (MCA v2.0, API v2.0, Component v1.6.1)
           MCA allocator: basic (MCA v2.0, API v2.0, Component v1.6.1)
           MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.6.1)
                MCA coll: basic (MCA v2.0, API v2.0, Component v1.6.1)
                MCA coll: hierarch (MCA v2.0, API v2.0, Component v1.6.1)
                MCA coll: inter (MCA v2.0, API v2.0, Component v1.6.1)
                MCA coll: self (MCA v2.0, API v2.0, Component v1.6.1)
                MCA coll: sm (MCA v2.0, API v2.0, Component v1.6.1)
                MCA coll: sync (MCA v2.0, API v2.0, Component v1.6.1)
                MCA coll: tuned (MCA v2.0, API v2.0, Component v1.6.1)
                  MCA io: romio (MCA v2.0, API v2.0, Component v1.6.1)
               MCA mpool: fake (MCA v2.0, API v2.0, Component v1.6.1)
               MCA mpool: rdma (MCA v2.0, API v2.0, Component v1.6.1)
               MCA mpool: sm (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA pml: bfo (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA pml: cm (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA pml: csum (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA pml: v (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA bml: r2 (MCA v2.0, API v2.0, Component v1.6.1)
              MCA rcache: vma (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA btl: self (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA btl: mx (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA btl: sm (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA btl: tcp (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA mtl: mx (MCA v2.0, API v2.0, Component v1.6.1)
                MCA topo: unity (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA osc: rdma (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA iof: hnp (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA iof: orted (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA iof: tool (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA oob: tcp (MCA v2.0, API v2.0, Component v1.6.1)
                MCA odls: default (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ras: cm (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ras: gridengine (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ras: loadleveler (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ras: slurm (MCA v2.0, API v2.0, Component v1.6.1)
               MCA rmaps: load_balance (MCA v2.0, API v2.0, Component v1.6.1)
               MCA rmaps: rank_file (MCA v2.0, API v2.0, Component v1.6.1)
               MCA rmaps: resilient (MCA v2.0, API v2.0, Component v1.6.1)
               MCA rmaps: round_robin (MCA v2.0, API v2.0, Component v1.6.1)
               MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.6.1)
               MCA rmaps: topo (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA rml: oob (MCA v2.0, API v2.0, Component v1.6.1)
              MCA routed: binomial (MCA v2.0, API v2.0, Component v1.6.1)
              MCA routed: cm (MCA v2.0, API v2.0, Component v1.6.1)
              MCA routed: direct (MCA v2.0, API v2.0, Component v1.6.1)
              MCA routed: linear (MCA v2.0, API v2.0, Component v1.6.1)
              MCA routed: radix (MCA v2.0, API v2.0, Component v1.6.1)
              MCA routed: slave (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA plm: rsh (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA plm: slurm (MCA v2.0, API v2.0, Component v1.6.1)
               MCA filem: rsh (MCA v2.0, API v2.0, Component v1.6.1)
              MCA errmgr: default (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ess: env (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ess: hnp (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ess: singleton (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ess: slave (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ess: slurm (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ess: slurmd (MCA v2.0, API v2.0, Component v1.6.1)
                 MCA ess: tool (MCA v2.0, API v2.0, Component v1.6.1)
             MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.6.1)
             MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.6.1)
             MCA grpcomm: hier (MCA v2.0, API v2.0, Component v1.6.1)
            MCA notifier: command (MCA v2.0, API v1.0, Component v1.6.1)
            MCA notifier: syslog (MCA v2.0, API v1.0, Component v1.6.1)
[root_at_limulus ~]# /usr/open-mx/bin/omx_info
Open-MX version 1.5.2
 build: deadline_at_limulus:/raid1/home/deadline/rpms-sl6/BUILD/open-mx-1.5.2
Mon Sep 10 08:44:16 EDT 2012
Found 1 boards (32 max) supporting 32 endpoints each:
 limulus:0 (board #0 name eth0 addr e0:69:95:35:d7:71)
   managed by driver 'e1000e'
Peer table is ready, mapper is 00:00:00:00:00:00
================================================
  0) e0:69:95:35:d7:71 limulus:0
  1) 00:1c:c0:9b:66:d0 n1:0
  2) 00:1a:4d:4a:bf:85 n0:0
  3) 00:1a:4d:4a:bf:83 n2:0
--
Doug
-- 
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