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Subject: Re: [OMPI users] Help with buidling MPI(Error: mpi.h not found)
From: Shiqing Fan (fan_at_[hidden])
Date: 2012-06-13 09:36:38


Hi Vimal,

I'm not sure how you can uninstall the other one, may be 'make
uninstall' from the source? Or you may also ask in their mailing list.

Another solution might use the full path for the executables, like
"c:\Program Files\OpenMPI_v1.6-win32\bin\mpicc hello.c" or under Cygwin:
"/cygdrive/c/Program\ Files/OpenMPI_v1.6-win32/bin/mpicc.exe hello.c".

Of course, I suggest to get rid of the other MPI implementation.

Shiqing

On 2012-06-13 3:17 PM, VimalMathew_at_[hidden] wrote:
>
> Hi Shiqing,
>
> I installed the LAN/MPI implementation first then the Open MPI
> implementation.
>
> Could this be the problem? If yes, how do I get rid of the LAN/MPI
> implementation?
>
> Thanks,
>
> Vimal
>
> *From:*Shiqing Fan [mailto:fan_at_[hidden]]
> *Sent:* Wednesday, June 13, 2012 4:49 AM
> *To:* Open MPI Users
> *Cc:* Mathew, Vimal
> *Subject:* Re: [OMPI users] Help with buidling MPI(Error: mpi.h not found)
>
> Hi Vimal,
>
> The output looks strange. If you use the installer under Cygwin, mpicc
> shouldn't try to link with liblammpio.* or any library in
> /usr/local/lib. So I guess the mpicc is messed up with some previously
> installed MPI implementations. Could you please verify that 'which
> mpicc' is the one you installed?
>
> Anyway, here I sent some screen shots that how it should look like
> under Cygwin.
>
> 1 - run command 'mpicc chello.c'
>
> 2 - run command 'mpicc chello.c -o chello'
>
> Regards,
> Shiqing
>
>
>
> On 2012-06-12 8:44 PM, VimalMathew_at_[hidden]
> <mailto:VimalMathew_at_[hidden]> wrote:
>
> I ran OpenMPI_v1.6-1_win64.exe.
> Now I get this message:
> C9995799_at_SOUMIWHP5003567 ~/openmpi-1.6
> $ mpicc hello.c -o hello
> WARNING: mpicc expected to find liblammpio.* in /usr/local/lib
> WARNING: MPI-2 IO support will be disabled
> gcc: hello.c: No such file or directory
> mpicc: No such file or directory
> --
> Vimal
>
>
> -----Original Message-----
> From:users-bounces_at_[hidden] <mailto:users-bounces_at_[hidden]> [mailto:users-bounces_at_[hidden]] On
> Behalf Of Jeff Squyres
> Sent: Tuesday, June 12, 2012 2:30 PM
> To: Open MPI Users
> Subject: Re: [OMPI users] Help with buidling MPI(Error: mpi.h not found)
>
> Probably easier to just run the Open MPI binary installer.
>
>
> On Jun 12, 2012, at 2:24 PM,<VimalMathew_at_[hidden]> <mailto:VimalMathew_at_[hidden]> wrote:
>
>
> So I simply download and run OpenMPI_v1.6-1_win64.exe?
>
> Or is there a way to fix the Fortran compiler?
>
>
>
> --
>
> Vimal
>
>
>
>
>
> -----Original Message-----
>
> From:users-bounces_at_[hidden] <mailto:users-bounces_at_[hidden]> [mailto:users-bounces_at_[hidden]]
>
> On Behalf Of Jeff Squyres
>
> Sent: Tuesday, June 12, 2012 2:20 PM
>
> To: Open MPI Users
>
> Subject: Re: [OMPI users] Help with buidling MPI(Error: mpi.h not
>
> found)
>
>
>
> It does not look like you successfully built Open MPI -- it looks like
>
>
>
> Open MPI's configure script aborted because your Fortran compiler
>
> wasn't
>
> behaving:
>
>
>
> -----
>
> checking if Fortran 77 compiler supports COMPLEX*16... yes checking
>
> size of Fortran 77 COMPLEX*16... 16 checking alignment of Fortran
>
> COMPLEX*16... 8 checking if Fortran 77 compiler supports COMPLEX*32...
>
> no checking for max Fortran MPI handle index... ( 0x7fffffff<
>
> 2147483647 ? 0x7fffffff : 2147483647 ) checking Fortran value for
>
> .TRUE.
>
> logical type... configure: error: Could not determine value of Fortran
>
>
>
> .TRUE.. Aborting.
>
> -----
>
>
>
> Anything that happened after that is somewhat irrelevant because Open
>
> MPI didn't configure properly.
>
>
>
> Looking in config.log, I see why:
>
>
>
> -----
>
> configure:44290: checking Fortran value for .TRUE. logical type
>
> configure:44386: gcc -DNDEBUG -g -O2 -finline-functions
>
> -fno-strict-aliasing -I. -c conftest.c
>
> configure:44393: $? = 0
>
> configure:44403: gfortran -o conftest conftest.o conftestf.f
>
> /usr/lib/gcc/i686-pc-cygwin/4.5.3/../../../../i686-pc-cygwin/bin/ld:
>
> reopening conftest.exe: Device or resource busy
>
>
>
> /usr/lib/gcc/i686-pc-cygwin/4.5.3/../../../../i686-pc-cygwin/bin/ld:
>
> final link failed: Device or resource busy
>
> collect2: ld returned 1 exit status
>
> configure:44410: $? = 1
>
> configure:44427: error: Could not determine value of Fortran .TRUE..
>
> Aborting.
>
> -----
>
>
>
> All this may be irrelevant, though, because it looks like you're
>
> building on Windows.
>
>
>
> In that case, you might well want to just download the OMPI Windows
>
> binaries. I don't know offhand if we support building on Windows with
>
>
>
> the normal configure / make methodology; we normally use cmake to
>
> build from source on Windows.
>
>
>
>
>
>
>
> On Jun 12, 2012, at 1:25 PM,<VimalMathew_at_[hidden]> <mailto:VimalMathew_at_[hidden]> wrote:
>
>
>
> Hi,
>
>
>
> I was directed to the OpenMPI website from the Boost Libraries page
>
> to
>
> install an MPI Installation.
>
> I've followed all the steps in the installation guide to configure
>
> and
>
> build MPI. When I try to compile the hello.c program which contains
>
> <mpi.h>.
>
> I get an error message saying mpi.h does not exist I've attached the
>
> config.log, config.out, make.out , ompi_info all and make-install.out
>
> files.
>
>
>
> Any help will be greatly appreciated!
>
>
>
> Thanks,
>
> Vimal Mathew
>
>
>
> <openmpi-1.6.7z>_______________________________________________
>
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>
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>
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>
>
>
>
>
> --
>
> Jeff Squyres
>
> jsquyres_at_[hidden] <mailto:jsquyres_at_[hidden]>
>
> For corporate legal information go to:
>
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
>
>
>
>
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>
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>
>
> --
> Jeff Squyres
> jsquyres_at_[hidden] <mailto:jsquyres_at_[hidden]>
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
>
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>
>
>
>
>
> --
> ---------------------------------------------------------------
> Shiqing Fan
> High Performance Computing Center Stuttgart (HLRS)
> Tel: ++49(0)711-685-87234 Nobelstrasse 19
> Fax: ++49(0)711-685-65832 70569 Stuttgart
> http://www.hlrs.de/organization/people/shiqing-fan/
> email:fan_at_[hidden] <mailto:fan_at_[hidden]>

-- 
---------------------------------------------------------------
Shiqing Fan
High Performance Computing Center Stuttgart (HLRS)
Tel: ++49(0)711-685-87234      Nobelstrasse 19
Fax: ++49(0)711-685-65832      70569 Stuttgart
http://www.hlrs.de/organization/people/shiqing-fan/
email: fan_at_[hidden]