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Subject: Re: [OMPI users] wrong core binding by openmpi-1.5.5
From: Brice Goglin (Brice.Goglin_at_[hidden])
Date: 2012-04-11 05:15:12


Here's a better patch. Still only compile tested :)
Brice

Le 11/04/2012 10:36, Brice Goglin a écrit :
> A quick look at the code seems to confirm my feeling. get/set_module()
> callbacks manipulate arrays of logical indexes, and they do not convert
> them back to physical indexes before binding.
>
> Here's a quick patch that may help. Only compile tested...
>
> Brice
>
>
>
> Le 11/04/2012 09:49, Brice Goglin a écrit :
>> Le 11/04/2012 09:06, tmishima_at_[hidden] a écrit :
>>> Hi, Brice.
>>>
>>> I installed the latest hwloc-1.4.1.
>>> Here is the output of lstopo -p.
>>>
>>> [root_at_node03 bin]# ./lstopo -p
>>> Machine (126GB)
>>> Socket P#0 (32GB)
>>> NUMANode P#0 (16GB) + L3 (5118KB)
>>> L2 (512KB) + L1 (64KB) + Core P#0 + PU P#0
>>> L2 (512KB) + L1 (64KB) + Core P#1 + PU P#4
>>> L2 (512KB) + L1 (64KB) + Core P#2 + PU P#8
>>> L2 (512KB) + L1 (64KB) + Core P#3 + PU P#12
>> Ok then the cpuset of this numanode is 1111.
>>
>>>> [node03.cluster:21706] [[55518,0],0] odls:default:fork binding child
>>>> [[55518,1],0] to cpus 1111
>> So openmpi 1.5.4 is correct.
>>
>>>> [node03.cluster:04706] [[40566,0],0] odls:default:fork binding child
>>>> [[40566,1],0] to cpus 000f
>> And openmpi 1.5.5 is indeed wrong.
>>
>> Random guess: 000f is the bitmask made of hwloc *logical* indexes. hwloc
>> cpusets (used for binding) are internally made of hwloc *physical*
>> indexes (1111 here).
>>
>> Jeff, Ralph:
>> How does OMPI 1.5.5 build hwloc cpusets for binding? Are you doing
>> bitmap operations on hwloc object cpusets?
>> If yes, I don't know what's going wrong here.
>> If no, are you building hwloc cpusets manually by setting individual
>> bits from object indexes? If yes, you must use *physical* indexes to do so.
>>
>> Brice
>>
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