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Subject: Re: [OMPI users] compilation error with pgcc Unknown switch
From: Jeffrey Squyres (jsquyres_at_[hidden])
Date: 2012-03-02 06:12:29


I'm going to have to defer this to those who regularly build on Crays...

Sandia / LANL?

On Mar 2, 2012, at 12:12 AM, Abhinav Sarje wrote:

> Hi again,
>
> I just tried building afresh -> svn co, autogen, configure, make. And
> it failed at the same point as before:
>>>> CCLD ompi_info
>>>> ../../../ompi/.libs/libmpi.so: undefined reference to `opal_atomic_swap_64'
>
> Any more ideas/fixes?
>
> Thanks all.
> Abhinav.
>
> On Fri, Mar 2, 2012 at 8:14 AM, Abhinav Sarje <asarje_at_[hidden]> wrote:
>> yes, I did a full autogen, configure, make clean and make all
>>
>>
>> On Thu, Mar 1, 2012 at 10:03 PM, Jeffrey Squyres <jsquyres_at_[hidden]> wrote:
>>> Did you do a full autogen / configure / make clean / make all ?
>>>
>>>
>>> On Mar 1, 2012, at 8:53 AM, Abhinav Sarje wrote:
>>>
>>>> Thanks Ralph. That did help, but only till the next hurdle. Now the
>>>> build fails at the following point with an 'undefined reference':
>>>> -----------
>>>> Making all in tools/ompi_info
>>>> make[2]: Entering directory
>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/tools/ompi_info'
>>>> CC ompi_info.o
>>>> CC output.o
>>>> CC param.o
>>>> CC components.o
>>>> CC version.o
>>>> CCLD ompi_info
>>>> ../../../ompi/.libs/libmpi.so: undefined reference to `opal_atomic_swap_64'
>>>> make[2]: *** [ompi_info] Error 2
>>>> make[2]: Leaving directory
>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/tools/ompi_info'
>>>> make[1]: *** [all-recursive] Error 1
>>>> make[1]: Leaving directory
>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi'
>>>> make: *** [all-recursive] Error 1
>>>> -----------
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> On Thu, Mar 1, 2012 at 5:25 PM, Ralph Castain <rhc_at_[hidden]> wrote:
>>>>> You need to update your source code - this was identified and fixed on Wed. Unfortunately, our trunk is a developer's environment. While we try hard to keep it fully functional, bugs do occasionally work their way into the code.
>>>>>
>>>>> On Mar 1, 2012, at 1:37 AM, Abhinav Sarje wrote:
>>>>>
>>>>>> Hi Nathan,
>>>>>>
>>>>>> I tried building on an internal login node, and it did not fail at the
>>>>>> previous point. But, after compiling for a very long time, it failed
>>>>>> while building libmpi.la, with a multiple definition error:
>>>>>> ----------
>>>>>> ...
>>>>>> CC mpiext/mpiext.lo
>>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-attr_fn_f.lo
>>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-conversion_fn_null_f.lo
>>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-f90_accessors.lo
>>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-strings.lo
>>>>>> CC mpi/f77/base/mpi_f77_base_libmpi_f77_base_la-test_constants_f.lo
>>>>>> CCLD mpi/f77/base/libmpi_f77_base.la
>>>>>> CCLD libmpi.la
>>>>>> mca/fcoll/dynamic/.libs/libmca_fcoll_dynamic.a(fcoll_dynamic_file_write_all.o):
>>>>>> In function `local_heap_sort':
>>>>>> /global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/mca/fcoll/dynamic/../../../../../ompi/mca/fcoll/dynamic/fcoll_dynamic_file_write_all.c:1111:
>>>>>> multiple definition of `local_heap_sort'
>>>>>> mca/fcoll/static/.libs/libmca_fcoll_static.a(fcoll_static_file_write_all.o):/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi/mca/fcoll/static/../../../../../ompi/mca/fcoll/static/fcoll_static_file_write_all.c:929:
>>>>>> first defined here
>>>>>> make[2]: *** [libmpi.la] Error 2
>>>>>> make[2]: Leaving directory
>>>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi'
>>>>>> make[1]: *** [all-recursive] Error 1
>>>>>> make[1]: Leaving directory
>>>>>> `/global/u1/a/asarje/hopper/openmpi-dev-trunk/build/ompi'
>>>>>> make: *** [all-recursive] Error 1
>>>>>> ----------
>>>>>>
>>>>>> Any idea why this is happening, and how to fix it? Again, I am using
>>>>>> the XE6 platform configuration file.
>>>>>>
>>>>>> Abhinav.
>>>>>>
>>>>>> On Wed, Feb 29, 2012 at 12:13 AM, Nathan Hjelm <hjelmn_at_[hidden]> wrote:
>>>>>>>
>>>>>>>
>>>>>>> On Mon, 27 Feb 2012, Abhinav Sarje wrote:
>>>>>>>
>>>>>>>> Hi Nathan, Gus, Manju,
>>>>>>>>
>>>>>>>> I got a chance to try out the XE6 support build, but with no success.
>>>>>>>> First I was getting this error: "PGC-F-0010-File write error occurred
>>>>>>>> (temporary pragma .s file)". After searching online about this error,
>>>>>>>> I saw that there is a patch at
>>>>>>>>
>>>>>>>> "https://svn.open-mpi.org/trac/ompi/attachment/ticket/2913/openmpi-trunk-ident_string.patch"
>>>>>>>> for this particular error.
>>>>>>>>
>>>>>>>> With the patched version, I did not get this error anymore, but got
>>>>>>>> the unknown switch flag error for the flag "-march=amdfam10"
>>>>>>>> (specified in the XE6 configuration in the dev trunk) at a particular
>>>>>>>> point even if I use the '-noswitcherror' flag with the pgcc compiler.
>>>>>>>>
>>>>>>>> If I remove this flag (-march=amdfam10), the build fails later at the
>>>>>>>> following point:
>>>>>>>> -------------------------
>>>>>>>> Making all in mca/ras/alps
>>>>>>>> make[2]: Entering directory
>>>>>>>> `/{mydir}/openmpi-dev-trunk/build/orte/mca/ras/alps'
>>>>>>>> CC ras_alps_component.lo
>>>>>>>> CC ras_alps_module.lo
>>>>>>>> PGC-F-0206-Can't find include file alps/apInfo.h
>>>>>>>> (../../../../../orte/mca/ras/alps/ras_alps_module.c: 37)
>>>>>>>> PGC/x86-64 Linux 11.10-0: compilation aborted
>>>>>>>> make[2]: *** [ras_alps_module.lo] Error 1
>>>>>>>> make[2]: Leaving directory
>>>>>>>> `/{mydir}/openmpi-dev-trunk/build/orte/mca/ras/alps'
>>>>>>>> make[1]: *** [all-recursive] Error 1
>>>>>>>> make[1]: Leaving directory `/{mydir}/openmpi-dev-trunk/build/orte'
>>>>>>>> make: *** [all-recursive] Error 1
>>>>>>>> --------------------------
>>>>>>>
>>>>>>>
>>>>>>> This is a known issue with Cray's frontend environment. Build on one of the
>>>>>>> internal login nodes.
>>>>>>>
>>>>>>>
>>>>>>> -Nathan
>>>>>>>
>>>>>>> _______________________________________________
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>>>>>>
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>>>>>
>>>>>
>>>>> _______________________________________________
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>>>>
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>>>
>>>
>>> --
>>> Jeff Squyres
>>> jsquyres_at_[hidden]
>>> For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/
>>>
>>>
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>
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-- 
Jeff Squyres
jsquyres_at_[hidden]
For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/