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Subject: Re: [OMPI users] ompi + bash + GE + modules
From: Mark Suhovecky (suhovecky_at_[hidden])
Date: 2012-01-11 13:12:30


Edmund-

Yeah, I've tried that. No difference. Our template .bash_profile sources
the user's .bashrc, so non-interactive bash shells in our setup are sourcing .bashrc.

The modules environment is defined, and works- only jonbs that run across multiple machines see this error.

Mark Suhovecky
HPC System Administrator
Center for Research Computing
University of Notre Dame
suhovecky_at_[hidden]
________________________________________
From: users-bounces_at_[hidden] [users-bounces_at_[hidden]] On Behalf Of Edmund Sumbar [esumbar_at_[hidden]]
Sent: Wednesday, January 11, 2012 12:52 PM
To: Open MPI Users
Subject: Re: [OMPI users] ompi + bash + GE + modules

Hi Mark,

Have you tried adding -l to the #! line?

#!/bin/bash -l

On Wed, Jan 11, 2012 at 10:42 AM, Mark Suhovecky <suhovecky_at_[hidden]<mailto:suhovecky_at_[hidden]>> wrote:
#!/bin/bash
#$ <some GE directives>

module load ompi

mpiexec

when the mpiexec is run, we'll see the following errors

bash: module: line 1: syntax error: unexpected end of file
bash: error importing function definition for `module'

--
Edmund Sumbar
Research Computing Support
University of Alberta
+1 780 492 9360