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Subject: Re: [OMPI users] UC Clean install fails
From: Rushton Martin (JMRUSHTON_at_[hidden])
Date: 2011-12-21 10:13:27


I agree it looks like it, but YaST ought to be able to work out
dependencies. Anyhow, here is the listing:

isis:/usr/lib64/mpi/gcc/openmpi # ls -R lib64
lib64:
libmca_common_sm.so.1 libmpi_f77.so.0 libopen-rte.so.0
libmca_common_sm.so.1.0.0 libmpi_f77.so.0.0.1 libopen-rte.so.0.0.0
libmpi.so.0 libmpi_f90.so.0 libopenmpi_malloc.so.0
libmpi.so.0.0.2 libmpi_f90.so.0.0.1
libopenmpi_malloc.so.0.0.0
libmpi_cxx.so.0 libopen-pal.so.0 mpi.mod
libmpi_cxx.so.0.0.1 libopen-pal.so.0.0.0
isis:/usr/lib64/mpi/gcc/openmpi #

Thanks all,

Martin Rushton
HPC System Manager, Weapons Technologies
Tel: 01959 514777, Mobile: 07939 219057
email: jmrushton_at_[hidden]
www.QinetiQ.com
QinetiQ - Delivering customer-focused solutions

Please consider the environment before printing this email.
-----Original Message-----
From: users-bounces_at_[hidden] [mailto:users-bounces_at_[hidden]] On
Behalf Of Ralph Castain
Sent: 21 December 2011 15:03
To: Open MPI Users
Subject: Re: [OMPI users] UC Clean install fails

How strange - it looks like you are missing a bunch of libraries. What
do you get if you do

ls -R /usr/lib64/mpi/gcc/openmpi/lib64

On Dec 21, 2011, at 6:26 AM, Rushton Martin wrote:

> For run-time problems:
>
> 1.Check the FAQ first. DONE. nothing
obvious.
> 2.The version of Open MPI that you're using. openmpi-1.4.3
> 3.The config.log file Installed as binary
> 4.The output of the "ompi_info --all" See enclosed gzip
> 5.If running on more than one node Not applicable
> 6.A detailed description of what is failing. See original posting
> PATH
> /usr/lib64/mpi/gcc/openmpi/bin:\
> ...:\
> /usr/local/bin:\
> /usr/bin:\
> /bin:/usr/bin/X11:\
> /usr/X11R6/bin:\
> /usr/games:\
> /usr/lib64/jvm/jre/bin
> LD_LIBRARY_PATH
> /usr/lib64/mpi/gcc/openmpi/lib64
> 7.Network Not applicable
>
> I hope this is the correct information you require.
>
> Martin Rushton
> HPC System Manager, Weapons Technologies
> Tel: 01959 514777, Mobile: 07939 219057
> email: jmrushton_at_[hidden]
> www.QinetiQ.com
> QinetiQ - Delivering customer-focused solutions
>
> Please consider the environment before printing this email.
> -----Original Message-----
> From: users-bounces_at_[hidden] [mailto:users-bounces_at_[hidden]]
> On Behalf Of Jeff Squyres (jsquyres)
> Sent: 21 December 2011 12:51
> To: Open MPI Users
> Cc: Open MPI Users
> Subject: Re: [OMPI users] Clean install fails
>
> Your OMPI install looks busted. Can you send all the info listed in
> the "support" section on the OMPI web site?
>
> Sent from my phone. No type good.
>
> On Dec 21, 2011, at 7:37 AM, "Rushton Martin" <JMRUSHTON_at_[hidden]>
> wrote:
>
>> I've just completed installing OpenSuSE 12.1 on a standalone node.
>> Using the bundled GCC and OpenMPI the user code fails. I've reduced
>> the problem to that below, but without the source I'm not sure what
>> orte_init is after. Using mpirun -np 1 or -np 2 both fail in the
>> same
>
>> way. Any suggestions?
>>
>> $ cat test.f
>> END
>> $ gfortran -o test-f test.f
>> $ ./test-f
>> $ echo $?
>> 0
>> $ mpirun ./test-f
>> [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file
>> runtime/orte_init.c at line 125
>> ---------------------------------------------------------------------
>> -
>> --
>> --
>> It looks like orte_init failed for some reason; your parallel process

>> is likely to abort. There are many reasons that a parallel process
>> can fail during orte_init; some of which are due to configuration or
>> environment problems. This failure appears to be an internal
>> failure;
>
>> here's some additional information (which may only be relevant to an
>> Open MPI developer):
>>
>> orte_ess_base_select failed
>> --> Returned value Not found (-13) instead of ORTE_SUCCESS
>> ---------------------------------------------------------------------
>> -
>> --
>> --
>> [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file
>> orterun.c at line 543 $
>>
>>
>> Martin Rushton
>> HPC System Manager, Weapons Technologies
>> Tel: 01959 514777, Mobile: 07939 219057
>> email: jmrushton_at_[hidden]
>> www.QinetiQ.com
>> QinetiQ - Delivering customer-focused solutions
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