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Subject: Re: [OMPI users] Building OpenMPI on Ubuntu
From: David Zhang (solarbikedz_at_[hidden])
Date: 2011-01-29 05:55:09


couldn't you just install openMPI from apt-get or package manager? those
should be pre-compiled and work for most machine types.

On Fri, Jan 28, 2011 at 6:26 PM, Damien Hocking <damien_at_[hidden]> wrote:

> Tom,
>
> Changing the path to icc is done in that configure file:
>
>
> #!/bin/bash
> CC=icc CXX=icpc F77=ifort FC=ifort ./configure
> --prefix=/usr/local/OpenMPI-intel --enable-static --enable-shared
>
> becomes
>
> #!/bin/bash
> CC=/usr/local/intel/Compiler/11.0/083/bin/intel64/icc CXX=icpc F77=ifort
> FC=ifort ./configure --prefix=/usr/local/OpenMPI-intel --enable-static
> --enable-shared
>
>
> You might have to do the same full path for CXX, F77, FC flags too.
>
> Damien
>
>
> CC=On 28/01/2011 7:18 PM, Greef, T.F.A. de wrote:
>
> Hi everybody,
>>
>> I try to compile openmpi with intel compilers on ubuntu 10.10
>> Everything configures and compiles OK. I used the following configure
>> file:
>>
>> The configure file looks like this:
>>
>> #!/bin/bash
>> CC=icc CXX=icpc F77=ifort FC=ifort ./configure
>> --prefix=/usr/local/OpenMPI-intel --enable-static --enable-shared
>>
>>
>> However, when doing make install the I recieve the following error:
>>
>> libtool: line 7847: icc: command not found
>> libtool: install: error: relink `libopen-rte.la' with the above command
>> before installing it
>>
>> This was previously reported in another thread (
>> http://www.open-mpi.org/community/lists/users/2009/05/9452.php).
>> I made sure that icc is in my path by sourcing the environmental variables
>> in .bashrc
>>
>> source /opt/intel/Compiler/11.1/059/bin/ifortvars.sh intel64
>> source /opt/intel/Compiler/11.1/073/bin/iccvars.sh intel64
>>
>> The output of my printenv is:
>>
>>
>> MANPATH=/opt/intel/Compiler/11.1/073/man/en_US:/opt/intel/Compiler/11.1/059/man/en_US:/usr/local/man:/usr/local/share/man:/usr/share/man
>> ORBIT_SOCKETDIR=/tmp/orbit-tom
>> SSH_AGENT_PID=1778
>>
>> INTEL_LICENSE_FILE=/opt/intel/Compiler/11.1/059/licenses:/opt/intel/licenses:/home/tom/intel/licenses:/opt/intel/Compiler/11.1/073/licenses:/opt/intel/licenses:/home/tom/intel/licenses
>> TERM=xterm
>> SHELL=/bin/bash
>>
>> XDG_SESSION_COOKIE=e1fd4608d199162d1943279000000007-1296259084.406953-2001076340
>>
>> LIBRARY_PATH=/opt/intel/Compiler/11.1/073/lib/intel64:/opt/intel/Compiler/11.1/059/lib/intel64
>> WINDOWID=56833742
>> GNOME_KEYRING_CONTROL=/tmp/keyring-3LAaIy
>> GTK_MODULES=canberra-gtk-module
>> USER=tom
>>
>> LD_LIBRARY_PATH=/opt/intel/Compiler/11.1/073/lib/intel64:/opt/intel/Compiler/11.1/059/lib/intel64
>>
>> LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*!
>>
> .x!
>
>>
>> wd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:
>> SSH_AUTH_SOCK=/tmp/keyring-3LAaIy/ssh
>> DEFAULTS_PATH=/usr/share/gconf/gnome.default.path
>> SESSION_MANAGER=local/tom-MS-7586:@
>> /tmp/.ICE-unix/1742,unix/tom-MS-7586:/tmp/.ICE-unix/1742
>> USERNAME=tom
>> XDG_CONFIG_DIRS=/etc/xdg/xdg-gnome:/etc/xdg
>>
>> NLSPATH=/opt/intel/Compiler/11.1/073/lib/intel64/locale/%l_%t/%N:/opt/intel/Compiler/11.1/073/idb/intel64/locale/%l_%t/%N:/opt/intel/Compiler/11.1/059/lib/intel64/locale/%l_%t/%N:/opt/intel/Compiler/11.1/059/idb/intel64/locale/%l_%t/%N
>> DESKTOP_SESSION=gnome
>>
>> PATH=/opt/intel/Compiler/11.1/073/bin/intel64:/opt/intel/Compiler/11.1/059/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
>> PWD=/home/tom
>> GDM_KEYBOARD_LAYOUT=us
>> LANG=en_US.utf8
>> GNOME_KEYRING_PID=1723
>> MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles
>> MANDATORY_PATH=/usr/share/gconf/gnome.mandatory.path
>> GDM_LANG=en_US.utf8
>> LOADEDMODULES=
>> GDMSESSION=gnome
>> SHLVL=1
>> HOME=/home/tom
>> GNOME_DESKTOP_SESSION_ID=this-is-deprecated
>> LOGNAME=tom
>> XDG_DATA_DIRS=/usr/share/gnome:/usr/local/share/:/usr/share/
>>
>> DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-bRYGCPNoS9,guid=4002f3c04511f4e74a36b27f0000001c
>> MODULESHOME=/usr/share/Modules
>> LESSOPEN=| /usr/bin/lesspipe %s
>> WINDOWPATH=7
>> DISPLAY=:0.0
>> LESSCLOSE=/usr/bin/lesspipe %s %s
>> XAUTHORITY=/var/run/gdm/auth-for-tom-Z65SUo/database
>> COLORTERM=gnome-terminal
>> module=() { eval `/usr/bin/modulecmd bash $*`
>> }
>>
>> In that particular thread it was suggested to use the full path of CC
>> (CC=/usr/local/intel/Compiler/11.0/083/bin/intel64/icc) on the build line
>> but I have no idea where to do this (i.e. which build line).
>> I tried to export the CC env. variable using export
>> CC=/usr/local/intel/Compiler/11.0/083/bin/intel64/icc but I got the same
>> error after running make install again.
>> I hope that anyone has a suggestion (I am a real beginner to Linux).
>>
>> best regards,
>>
>> Tom
>>
>> _______________________________________________
>> users mailing list
>> users_at_[hidden]
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>
>
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-- 
David Zhang
University of California, San Diego