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Subject: Re: [OMPI users] Error when using OpenMPI with SGE multiple hosts
From: Terry Dontje (terry.dontje_at_[hidden])
Date: 2010-11-17 08:57:44


On 11/17/2010 07:41 AM, Chris Jewell wrote:
> On 17 Nov 2010, at 11:56, Terry Dontje wrote:
>>> You are absolutely correct, Terry, and the 1.4 release series does include the proper code. The point here, though, is that SGE binds the orted to a single core, even though other cores are also allocated. So the orted detects an external binding of one core, and binds all its children to that same core.
>> I do not think you are right here. Chris sent the following which looks like OGE (fka SGE) actually did bind the hnp to multiple cores. However that message I believe is not coming from the processes themselves and actually is only shown by the hnp. I wonder if Chris adds a "-bind-to-core" option we'll see more output from the a.out's before they exec unterm?
> As requested using
>
> $ qsub -pe mpi 8 -binding linear:2 myScript.com'
>
> and
>
> 'mpirun -mca ras_gridengine_verbose 100 --report-bindings -by-core -bind-to-core ./unterm'
>
> [exec5:06671] System has detected external process binding to cores 0028
> [exec5:06671] ras:gridengine: JOB_ID: 59434
> [exec5:06671] ras:gridengine: PE_HOSTFILE: /usr/sge/default/spool/exec5/active_jobs/59434.1/pe_hostfile
> [exec5:06671] ras:gridengine: exec5.cluster.stats.local: PE_HOSTFILE shows slots=2
> [exec5:06671] ras:gridengine: exec1.cluster.stats.local: PE_HOSTFILE shows slots=2
> [exec5:06671] ras:gridengine: exec4.cluster.stats.local: PE_HOSTFILE shows slots=1
> [exec5:06671] ras:gridengine: exec3.cluster.stats.local: PE_HOSTFILE shows slots=1
> [exec5:06671] ras:gridengine: exec2.cluster.stats.local: PE_HOSTFILE shows slots=1
> [exec5:06671] ras:gridengine: exec7.cluster.stats.local: PE_HOSTFILE shows slots=1
>
> No more info. I note that the external binding is slightly different to what I had before, but our cluster is busier today :-)
>
I would have expected more output.

--td
> Chris
>
>
> --
> Dr Chris Jewell
> Department of Statistics
> University of Warwick
> Coventry
> CV4 7AL
> UK
> Tel: +44 (0)24 7615 0778
>
>
>
>
>
>
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-- 
Oracle
Terry D. Dontje | Principal Software Engineer
Developer Tools Engineering | +1.781.442.2631
Oracle *- Performance Technologies*
95 Network Drive, Burlington, MA 01803
Email terry.dontje_at_[hidden] <mailto:terry.dontje_at_[hidden]>



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