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Subject: Re: [OMPI users] memory limits on remote nodes
From: Ralph Castain (rhc_at_[hidden])
Date: 2010-10-07 18:40:24


On Oct 7, 2010, at 2:55 AM, Reuti wrote:

> Am 07.10.2010 um 01:55 schrieb David Turner:
>
>> Hi,
>>
>> We would like to set process memory limits (vmemoryuse, in csh
>> terms) on remote processes. Our batch system is torque/moab.
>
> Isn't it possible to set this up in torque/moab directly? In SGE I would simply define h_vmem and it's per slot then; and with a tight integration all Open MPI processes will be children of sge_execd and the limit will be enforced.

I could be wrong, but I -think- the issue here is that the soft limits need to be set on a per-job basis.

>
> -- Reuti
>
>
>> The nodes of our cluster each have 24GB of physical memory, of
>> which 4GB is taken up by the kernel and the root file system.
>> Note that these are diskless nodes, so no swap either.
>>
>> We can globally set the per-process limit to 2.5GB. This works
>> fine if applications run "packed": 8 MPI tasks running on each
>> 8-core node, for an aggregate limit of 20GB. However, if a job
>> only wants to run 4 tasks, the soft limit can safely be raised
>> to 5GB. 2 tasks, 10GB. 1 task, the full 20GB.
>>
>> Upping the soft limit in the batch script itself only affects
>> the "head node" of the job. Since limits are not part of the
>> "environment", I can find no way propagate them to remote nodes.
>>
>> If I understand how this all works, the remote processes are
>> started by orted, and therefore inherit its limits. Is there
>> any sort of orted configuration that can help here? Any other
>> thoughts about how to approach this?
>>
>> Thanks!
>>
>> --
>> Best regards,
>>
>> David Turner
>> User Services Group email: dpturner_at_[hidden]
>> NERSC Division phone: (510) 486-4027
>> Lawrence Berkeley Lab fax: (510) 486-4316
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