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Subject: Re: [OMPI users] hdf5 build error using openmpi and Intel Fortran
From: Jeff Squyres (jsquyres) (jsquyres_at_[hidden])
Date: 2010-10-06 06:35:53


This looks like something you should take up with the hdf5 people.

Sent from my PDA. No type good.

On Oct 6, 2010, at 3:09 AM, Götz Waschk <goetz.waschk_at_[hidden]> wrote:

> Hi everyone,
>
> I'm trying to build hdf5 1.8.5-patch1 on RHEL5 using openmpi 1.4 and
> the Intel Compiler suite 11.0. I have Fortran, MPI and shared library
> support enabled. I get this error at linking stage:
>
> /bin/sh ../../libtool --tag=FC --mode=link mpif90 -O2 -g -pipe -Wall
> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
> --param=ssp-buffer-size=4 -m64 -mtune=generic -fPIC -O3 -I../../src
> -I../../fortran/src -version-info 6:4:0
> -Wl,-rpath=/usr/lib64/openmpi/1.4-icc/lib -lmpi -o libhdf5_fortran.la
> -rpath /usr/lib64 H5f90global.lo H5fortran_types.lo H5_ff.lo H5Aff.lo
> H5Dff.lo H5Eff.lo H5Fff.lo H5Gff.lo H5Iff.lo H5Lff.lo H5Off.lo
> H5Pff.lo H5Rff.lo H5Sff.lo H5Tff.lo H5Zff.lo
> H5_DBLE_InterfaceInclude.lo H5f90kit.lo H5_f.lo H5Af.lo H5Df.lo
> H5Ef.lo H5Ff.lo H5Gf.lo H5If.lo H5Lf.lo H5Of.lo H5Pf.lo H5Rf.lo
> H5Sf.lo H5Tf.lo H5Zf.lo H5FDmpiof.lo HDF5mpio.lo H5FDmpioff.lo -lsz
> -lz -lm
> libtool: link: mpif90 -shared .libs/H5f90global.o
> .libs/H5fortran_types.o .libs/H5_ff.o .libs/H5Aff.o .libs/H5Dff.o
> .libs/H5Eff.o .libs/H5Fff.o .libs/H5Gff.o .libs/H5Iff.o .libs/H5Lff.o
> .libs/H5Off.o .libs/H5Pff.o .libs/H5Rff.o .libs/H5Sff.o .libs/H5Tff.o
> .libs/H5Zff.o .libs/H5_DBLE_InterfaceInclude.o .libs/H5f90kit.o
> .libs/H5_f.o .libs/H5Af.o .libs/H5Df.o .libs/H5Ef.o .libs/H5Ff.o
> .libs/H5Gf.o .libs/H5If.o .libs/H5Lf.o .libs/H5Of.o .libs/H5Pf.o
> .libs/H5Rf.o .libs/H5Sf.o .libs/H5Tf.o .libs/H5Zf.o .libs/H5FDmpiof.o
> .libs/HDF5mpio.o .libs/H5FDmpioff.o -lmpi -lsz -lz -lm -m64
> -mtune=generic -rpath=/usr/lib64/openmpi/1.4-icc/lib -soname
> libhdf5_fortran.so.6 -o .libs/libhdf5_fortran.so.6.0.4
> ifort: command line warning #10156: ignoring option '-r'; no argument required
> ifort: command line warning #10156: ignoring option '-s'; no argument required
> ld: libhdf5_fortran.so.6: No such file: No such file or directory
> make[1]: *** [libhdf5_fortran.la] Fehler 1
>
>
> hdf5 builds fine with static libraries only, but they become huge. It
> looks like libtool or mpif90 or something else is calling ifort with
> the wrong options. Any idea on how to fix this?
>
> Regards, Götz Waschk
>
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