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Subject: [OMPI users] problem with mpirun
From: asmae.elbahlouli_at_[hidden]
Date: 2010-06-11 05:03:03


hello,

i'm doing a tutorial on OpenFoam, but when i run in parallel by typing "mpirun -np 30 foamProMesh -parallel | tee 2>&1 log/FPM.log"

On the terminal window , after fews seconds of run, it iterate but i have at the end:

 

 

tta201@linux-qv31:/media/OpenFoam/Travaux/F1car_asmaetest> mpirun -np 30 -machinefile machinefile foamProMesh -parallel | tee 2>&1 log/FPM.log

/*---------------------------------------------------------------------------*\                                                               

|                  |                                                          |                                                               

|   F ield         | FOAM:     The Open Source CFD Toolbox                    |                                                               

|   O peration     | Version:  1.5-2.2                                        |                                                               

|   A nd           | Web:      http://www.iconcfd.com                         |                                                               

|   M anipulation  |                                                          |                                                               

\*---------------------------------------------------------------------------*/                                                                

Exec   : foamProMesh -parallel                                                                                                                

Date   : Jun 11 2010                                                                                                                          

Time   : 10:42:24                                                                                                                             

Host   : Foam1                                                                                                                                 

PID    : 9789                                                                                                                                 

Case   : /media/OpenFoam/Travaux/F1car_asmaetest                                                                                              

nProcs : 30                                                                                                                                    

Slaves :                                                                                                                                      

29                                                                                                                                            

(                                                                                                                                             

Foam1.9790                                                                                                                                     

Foam1.9791                                                                                                                                    

Foam1.9792                                                                                                                                    

Foam2.9224                                                                                                                                     

Foam2.9225                                                                                                                                    

Foam2.9226                                                                                                                                    

Foam2.9227                                                                                                                                    

Foam3.8925                                                                                                                                     

Foam3.8926                                                                                                                                    

Foam3.8927                                                                                                                                    

...... 

Added patches in = 0 s

 

Selecting decompositionMethod hierarchical

 

Overall mesh bounding box  : (-5.60160988792 -5.00165616875 -0.259253998544) (9.39931715541 5.00165616875 5.74982363461)

Relative tolerance         : 1e-06                                                                                     

Absolute matching distance : 1.90053435613e-05                                                                         

 

 

Determining initial surface intersections

-----------------------------------------

 

[1]

[1]

[1] Face 42832 is in zone 5, its coupled face is in zone -1#0  Foam::error::printStack(Foam::Ostream&) in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/lib/linux64GccDPOpt/libFOAM.so"

#1  Foam::error::abort() in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/lib/linux64GccDPOpt/libFOAM.so"

#2  Foam::meshRefinement::checkCoupledFaceZones(Foam::polyMesh const&) in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/lib/linux64GccDPOpt/libautoMesh.so"

#3  main in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/applications/bin/linux64GccDPOpt/foamProMesh"

#4  __libc_start_main in "/lib64/libc.so.6"

#5  __gxx_personality_v0 at /usr/src/packages/BUILD/glibc-2.3/csu/../sysdeps/x86_64/elf/start.S:116

[1]

[1]

[1]     From function meshRefinement::checkCoupledFaceZones(const polyMesh&)

[1]     in file autoHexMesh/meshRefinement/meshRefinement.C at line 1180.

[1]

FOAM parallel run aborting

[1]

--------------------------------------------------------------------------

MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD

with errorcode 1.

 

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.

You may or may not see output from other processes, depending on

exactly when Open MPI kills them.

--------------------------------------------------------------------------

[11]

[11]

[11] Face 42862 is in zone -1, its coupled face is in zone 5#0  Foam::error::printStack(Foam::Ostream&) in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/lib/linux64GccDPOpt/libFOAM.so"

#1  Foam::error::abort() in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/lib/linux64GccDPOpt/libFOAM.so"

#2  Foam::meshRefinement::checkCoupledFaceZones(Foam::polyMesh const&) in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/lib/linux64GccDPOpt/libautoMesh.so"

#3  main in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/applications/bin/linux64GccDPOpt/foamProMesh"

#4  __libc_start_main in "/lib64/libc.so.6"

#5  __gxx_personality_v0 at /usr/src/packages/BUILD/glibc-2.3/csu/../sysdeps/x86_64/elf/start.S:116

[11]

[11]

[11]     From function meshRefinement::checkCoupledFaceZones(const polyMesh&)

[11]     in file autoHexMesh/meshRefinement/meshRefinement.C at line 1180.

[11]

FOAM parallel run aborting

[11]

[8]

[8]

[8] Face 41663 is in zone -1, its coupled face is in zone 5#0  Foam::error::printStack(Foam::Ostream&) in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/lib/linux64GccDPOpt/libFOAM.so"

#1  Foam::error::abort() in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/lib/linux64GccDPOpt/libFOAM.so"

#2  Foam::meshRefinement::checkCoupledFaceZones(Foam::polyMesh const&) in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/lib/linux64GccDPOpt/libautoMesh.so"

#3  main in "/media/OpenFoam/FOAMpro/FOAMpro-1.5-2.2/FOAM-1.5-2.2/applications/bin/linux64GccDPOpt/foamProMesh"

#4  __libc_start_main in "/lib64/libc.so.6"

#5  __gxx_personality_v0 at /usr/src/packages/BUILD/glibc-2.3/csu/../sysdeps/x86_64/elf/start.S:116

[8]

[8]

[8]     From function meshRefinement::checkCoupledFaceZones(const polyMesh&)

[8]     in file autoHexMesh/meshRefinement/meshRefinement.C at line 1180.

[8]

FOAM parallel run aborting

[8]

--------------------------------------------------------------------------

mpirun has exited due to process rank 1 with PID 9790 on

node 10.0.0.1 exiting without calling "finalize". This may

have caused other processes in the application to be

terminated by signals sent by mpirun (as reported here).

--------------------------------------------------------------------------

[linux-qv31:16344] 2 more processes have sent help message help-mpi-api.txt / mpi-abort

[linux-qv31:16344] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages