Then I put MPI on server with 4 nodes.
I have to put 1 for each?
How do I do that?
What's the first step in this case when I want to run 1 job in 4 nodes (the same server)?
Cause all of then are make the same job again.
sorry for all...
De: Jeff Squyres <jsquyres_at_[hidden]>
Para: Open MPI Users <users_at_[hidden]>
Enviadas: Terça-feira, 8 de Junho de 2010 10:06:25
Assunto: Re: [OMPI users] Res: Gromacs run in parallel
I know nothing about Gromacs, but you might want to ensure that your Gromacs was compiled with Open MPI. A common symptom of "mpirun -np 4 my_mpi_application" running 4 1-process MPI jobs (instead of 1 4-process MPI job) is that you compiled my_mpi_application with one MPI implementation, but then used the mpirun from a different MPI implementation.
On Jun 8, 2010, at 8:59 AM, lauren wrote:
> The version of Gromacs is 4.0.7.
> This is the first time that I using Gromacs, then excuse me if I'm nonsense.
> Wich part of md.log output should I post?
> after or before the input description?
> thanks for all,
> and sorry
> De: Carsten Kutzner <ckutzne_at_[hidden]>
> Para: Open MPI Users <users_at_[hidden]>
> Enviadas: Domingo, 6 de Junho de 2010 9:51:26
> Assunto: Re: [OMPI users] Gromacs run in parallel
> which version of Gromacs is this? Could you post the first lines of
> the md.log output file?
> On Jun 5, 2010, at 10:23 PM, lauren wrote:
>> sorry my english..
>> I want to know how can I run Gromancs in parallel!
>> Because when I used
>> mdrun &
>> mpiexec -np 4 mdrun_mpi -v -deffnm em
>> to run the minimization in 4 cores > all cores make the same job, again!
>> They don't run together.
>> I want all in parallel make the job faster.
>> what could be wrong?
>> thank's a lot!
>> users mailing list
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