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Subject: Re: [OMPI users] problem using new OMPI1.4.1 vie SGE
From: Matthew MacManes (macmanes_at_[hidden])
Date: 2010-04-26 11:37:13


Hi Rangam,

Thanks.. Just tried. Still the 'no route to host' issue..

Matt
_________________________________
Matthew MacManes
PhD Candidate
University of California- Berkeley
Museum of Vertebrate Zoology
Phone: 510-495-5833
Lab Website: http://ib.berkeley.edu/labs/lacey
Personal Website: http://macmanes.com/

On Mon, Apr 26, 2010 at 08:14, Addepalli, Srirangam V <
srirangam.v.addepalli_at_[hidden]> wrote:

> Hello Matthew,
>
> Not sure it it helps but I am guessing that
>
> module load openmpi (in bash script) is updating variables to RANGER
> openmpi installation. Try removing this line in your script file and
> resubmit your job, also
> #$ -V in the submission script exports env variables from your current
> terminal. Check if you have the correct setting before your submit your job.
>
> Rangam
>
> ______________________________ __________
> From: users-bounces_at_[hidden] [users-bounces_at_[hidden]] On Behalf Of
> Matthew MacManes [macmanes_at_[hidden]]
> Sent: Monday, April 26, 2010 10:08 AM
> To: Open Users
> Subject: [OMPI users] problem using new OMPI1.4.1 vie SGE
>
> I am using SGE to submit jobs to one of the TeraGrid sites, specifically
> TACC-RANGER. The problem, is, that I am using a program that requires
> OpenMPI version 1.4.1, and the latest install on RANGER is 1.3.1. I was told
> that I could install OpenMPI in my home directory, and run jobs using my
> newer version.. However, I am having problems doing this, getting the error
> message seen below.
>
> Its seems that the compute nodes are not accessing all the sufficient
> libraries for the newer version of OpenMPI.
>
> Can anybody tell me what I can do to get the jobs running using the newer
> version of OpenMPI. Thanks!
>
> TACC: Setting memory limits for job 1349843 to 3984588 KB
> TACC: Dumping job script:
> ------------------------------
> --------------------------------------------------
> #!/bin/bash
> export TMPDIR=$SCRATCH/abyss_tmp/
> LD_LIBRARY_PATH=/work/01301/mmacmane
> LD_LIBRARY_PATH=/work/01301/mmacmane/bin
> LD_LIBRARY_PATH=/work/01301/mmacmane/include
> LD_LIBRARY_PATH=/work/01301/mmacmane/etc
> LD_LIBRARY_PATH=/work/01301/mmacmane/lib
> LD_LIBRARY_PATH=/work/01301/mmacmane/openmpi-1.4.1
> cd /work/01301/mmacmane/Ray-0.0.6
> module load openmpi
> #$ -N testing_MRNA2
> #$ -j y
> #$ -o /work/01301/mmacmane/Ray-0.0.6/testing_MRNA2
> #$ -pe 8way 128
> #$ -q normal
> #$ -l h_rt=2:00:00
> #$ -M macmanes_at_[hidden]<mailto:macmanes_at_[hidden]>
> #$ -m be
> #$ -cwd
> #$ -V
> /work/01301/mmacmane/bin/mpirun Ray
> /work/01301/mmacmane/Ray-0.0.6/Ray_snp.txt--------------------------------------------------------------------------------
> TACC: Done.
> Module mvapich superceded
>
> Ray Copyright (C) 2010 Sébastien Boisvert, Jacques Corbeil, François
> Laviolette
> http://denovoassembler.sf.net/
> This program comes with ABSOLUTELY NO WARRANTY.
> This is free software, and you are welcome to redistribute it
> under certain conditions; see "gpl-3.0.txt" for details.
> [i180-212.ranger.tacc.utexas.edu][[29053,1],114][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],119][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],123][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],17][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],42][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> [i128-412.ranger.tacc.utexas.edu][[29053,1],44][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],1][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],13][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],9][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],104][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],106][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],102][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],45][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> connect() to 192.168.4.244 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],83][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],84][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],92][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],66][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],70][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],52][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],60][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],58][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],72][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],23][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],29][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],31][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],35][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],43][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],0][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],6][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],14][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],73][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> [i105-104.ranger.tacc.utexas.edu][[29053,1],77][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> connect() to 192.168.15.0 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],75][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],99][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> [i156-212.ranger.tacc.utexas.edu][[29053,1],109][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],103][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> connect() to 192.168.16.232 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],51][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],55][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],57][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],113][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],116][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],115][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],19][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],21][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],27][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],37][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],47][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],33][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],8][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],10][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],4][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],97][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],101][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],107][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],82][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],85][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],90][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],79][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],65][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],67][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],61][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],53][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],59][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],127][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],121][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],124][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],18][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],25][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],28][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],39][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],34][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],38][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],3][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],2][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],12][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],105][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],108][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],111][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],91][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],80][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],87][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],69][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],68][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],71][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],63][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> [i116-312.ranger.tacc.utexas.edu][[29053,1],48][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],49][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> connect() to 192.168.7.64 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],16][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],24][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],26][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],125][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],122][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],126][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],40][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],41][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],46][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],15][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],7][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],11][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],100][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],110][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],96][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],88][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],89][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],94][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],76][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],64][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],78][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],62][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],50][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> [i116-312.ranger.tacc.utexas.edu][[29053,1],56][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> connect() to 192.168.7.64 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],20][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> [i161-311.ranger.tacc.utexas.edu][[29053,1],22][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> [i161-311.ranger.tacc.utexas.edu][[29053,1],30][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.5.170 failed: No route to host (113)
> connect() to 192.168.5.170 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],118][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],112][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],117][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],32][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i128-412.ranger.tacc.utexas.edu][[29053,1],36][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.4.244 failed: No route to host (113)
> [i120-302.ranger.tacc.utexas.edu][[29053,1],5][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.13.99 failed: No route to host (113)
> [i156-212.ranger.tacc.utexas.edu][[29053,1],98][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.16.232 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],86][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],95][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],93][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: No route to host (113)
> [i105-104.ranger.tacc.utexas.edu][[29053,1],74][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.15.0 failed: No route to host (113)
> [i116-312.ranger.tacc.utexas.edu][[29053,1],54][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.7.64 failed: No route to host (113)
> [i180-212.ranger.tacc.utexas.edu][[29053,1],120][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.12.104 failed: Connection timed out (110)
> [i170-204.ranger.tacc.utexas.edu][[29053,1],81][btl_tcp_endpoint.c:638:mca_btl_tcp_endpoint_complete_connect]
> connect() to 192.168.2.196 failed: Connection timed out (110)
> --------------------------------------------------------------------------
> A daemon (pid 24537) died unexpectedly with status 137 while attempting
> to launch so we are aborting.
>
> There may be more information reported by the environment (see above).
>
> This may be because the daemon was unable to find all the needed shared
> libraries on the remote node. You may set your LD_LIBRARY_PATH to have the
> location of the shared libraries on the remote nodes and this will
> automatically be forwarded to the remote nodes.
> ------------------------------
> --------------------------------------------
> --------------------------------------------------------------------------
> mpirun noticed that the job aborted, but has no info as to the process
> that caused that situation.
> --------------------------------------------------------------------------
> [i120-302.ranger.tacc.utexas.edu:24530] [[29053,0],0]-[[29053,0],4]
> mca_oob_tcp_msg_recv: readv failed: Connection reset by peer (104)
> --------------------------------------------------------------------------
> mpirun was unable to cleanly terminate the daemons on the nodes shown
> below. Additional manual cleanup may be required - please refer to
> the "orte-clean" tool for assistance.
> --------------------------------------------------------------------------
> i128-412.ranger.tacc.utexas.edu
> i105-104.ranger.tacc.utexas.edu
> i170-204.ranger.tacc.utexas.edu
> [i161-311.ranger.tacc.utexas.edu:28177] [[29053,0],1] routed:binomial:
> Connection to lifeline [[29053,0],0] lost
> [i156-212.ranger.tacc.utexas.edu:16331] [[29053,0],6] routed:binomial:
> Connection to lifeline [[29053,0],0] lost
> [i180-212.ranger.tacc.utexas.edu:09688] [[29053,0],7] routed:binomial:
> Connection to lifeline [[29053,0],0] lost
> TACC: Cleaning up after job: 1349843
> TACC: Done.
> _________________________________
> Matthew MacManes
> PhD Candidate
> University of California- Berkeley
> Museum of Vertebrate Zoology
> Phone: 510-495-5833
> Lab Website: http://ib.berkeley.edu/labs/lacey
> Personal Website: http://macmanes.com/
>
> _______________________________________________
> users mailing list
> users_at_[hidden]
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>