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Subject: Re: [OMPI users] Openpi 1.4.1 PGI 10.2.1 libpgnuma issue
From: Francesco Iannone (francesco.iannone_at_[hidden])
Date: 2010-04-25 06:41:05


Sorry I made a mistake to insert into zipped files.

So I send it once again.

regards

On 23/04/10 20.01, "Francesco Iannone" <francesco.iannone_at_[hidden]>
wrote:

> Dear all
>
> I rebuilt openmpi 1.4.1 with PGI 10.2.1 enabling the libpgnuma.a of PGI.
>
> Linux kernel 2.6.18-164.11.1.el5 #1 SMP Sat Jan 23 21:22:33 CET 2010 x86_64
> x86_64 x86_64 GNU/Linux
>
> I have the follow problem to rebuild the package considering libnuma.a as
> symbolic link to PGI NUMA library libpgnuma.a:
>
> /bin/sh ../../../libtool --tag=CC --mode=link pgcc -O -DNDEBUG
> -export-dynamic -o opal_wrapper opal_wrapper.o ../../../opal/libopen-pal.la
> -lnsl -lutil -lpthread
> libtool: link: pgcc -O -DNDEBUG -o .libs/opal_wrapper opal_wrapper.o
> -Wl,--export-dynamic ../../../opal/.libs/libopen-pal.so
> -L/afs/efda-itm.eu/project/compilers/pgi10.2/linux86-64/2010/libso/ -lnuma
> -ldl -lnsl -lutil -lpthread -Wl,-rpath -Wl,/opt/mpi/openmpi-1.4.1/pgi/lib
> ../../../opal/.libs/libopen-pal.so: undefined reference to `mbind'
> ../../../opal/.libs/libopen-pal.so: undefined reference to
> `numa_setlocal_memory'
> ../../../opal/.libs/libopen-pal.so: undefined reference to `numa_set_strict'
> make[2]: *** [opal_wrapper] Error 2
> make[2]: Leaving directory
> `/afs/efda-itm.eu/project/mpi/openmpi-1.4.1_build_pgi/opal/tools/wrappers'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory
> `/afs/efda-itm.eu/project/mpi/openmpi-1.4.1_build_pgi/opal'
> make: *** [all-recursive] Error 1
>
> Attached you find the output of the configure and make zipped.
>
> Could somebody help me.
>
> Thanks in advance
>
> regards
>
> Dr. Francesco Iannone
> Associazione EURATOM-ENEA sulla Fusione
> C.R. ENEA Frascati
> Via E. Fermi 45
> 00044 Frascati (Roma) Italy
> phone 00-39-06-9400-5124
> fax 00-39-06-9400-5524
> mailto:francesco.iannone_at_[hidden]
> http://www.afs.enea.it/iannone
>
>
> _______________________________________________
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> users_at_[hidden]
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Dr. Francesco Iannone
Associazione EURATOM-ENEA sulla Fusione
C.R. ENEA Frascati
Via E. Fermi 45
00044 Frascati (Roma) Italy
phone 00-39-06-9400-5124
fax 00-39-06-9400-5524
mailto:francesco.iannone_at_[hidden]
http://www.afs.enea.it/iannone