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Subject: [OMPI users] Openpi 1.4.1 PGI 10.2.1 libpgnuma issue
From: Francesco Iannone (francesco.iannone_at_[hidden])
Date: 2010-04-23 14:01:28


Dear all

I rebuilt openmpi 1.4.1 with PGI 10.2.1 enabling the libpgnuma.a of PGI.

Linux kernel 2.6.18-164.11.1.el5 #1 SMP Sat Jan 23 21:22:33 CET 2010 x86_64
x86_64 x86_64 GNU/Linux

I have the follow problem to rebuild the package considering libnuma.a as
symbolic link to PGI NUMA library libpgnuma.a:

/bin/sh ../../../libtool --tag=CC --mode=link pgcc -O -DNDEBUG
-export-dynamic -o opal_wrapper opal_wrapper.o
../../../opal/libopen-pal.la -lnsl -lutil -lpthread
libtool: link: pgcc -O -DNDEBUG -o .libs/opal_wrapper opal_wrapper.o
-Wl,--export-dynamic ../../../opal/.libs/libopen-pal.so
-L/afs/efda-itm.eu/project/compilers/pgi10.2/linux86-64/2010/libso/ -lnuma
-ldl -lnsl -lutil -lpthread -Wl,-rpath -Wl,/opt/mpi/openmpi-1.4.1/pgi/lib
../../../opal/.libs/libopen-pal.so: undefined reference to `mbind'
../../../opal/.libs/libopen-pal.so: undefined reference to
`numa_setlocal_memory'
../../../opal/.libs/libopen-pal.so: undefined reference to `numa_set_strict'
make[2]: *** [opal_wrapper] Error 2
make[2]: Leaving directory
`/afs/efda-itm.eu/project/mpi/openmpi-1.4.1_build_pgi/opal/tools/wrappers'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/afs/efda-itm.eu/project/mpi/openmpi-1.4.1_build_pgi/opal'
make: *** [all-recursive] Error 1

Attached you find the output of the configure and make zipped.

Could somebody help me.

Thanks in advance

regards

Dr. Francesco Iannone
Associazione EURATOM-ENEA sulla Fusione
C.R. ENEA Frascati
Via E. Fermi 45
00044 Frascati (Roma) Italy
phone 00-39-06-9400-5124
fax 00-39-06-9400-5524
mailto:francesco.iannone_at_[hidden]
http://www.afs.enea.it/iannone