I am observing a very strange performance issue with my openmpi program.
I have compute intensive openmpi based application that keeps the data
in memory, process the data and then dumps it to GPFS parallel file
system. GPFS parallel file system server is connected to a QDR
infiniband switch from Voltaire.
If my cluster is connected to a DDR infiniband switch which in turn
connects to file system server on QDR switch, I see that I can run my
application under checkpoint/restart control (with -am ft-enable-cr) and
I can checkpoint (ompi-checkpoint) successfully and the application gets
completed after few additional seconds.
If my cluster is connected to the same QDR switch which connects to file
system server, I see that my application takes close to 10x time to
complete if I run it under checkpoint/restart control (with -am
ft-enable-cr). If I run the same application using a plain mpirun
command (ie; without -am ft_enable_cr), it finishes within a minute.
I am using open mpi 1.3.4 and BLCR 0.8.2 for checkpointing
Are there any specific MCA parameters that I should tune to address this
problem? Any other pointers will be really helpful.
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