Hopefully this is an easier question....
My cluster uses Infiniband interconnects (Mellanox Infinihost III and some ConnectX). I'm seeing terrible and sporadic latency (order ~1000 microseconds) as measured by the subounce code (http://sourceforge.net/projects/subounce/), but the bandwidth is as expected. I'm used to seeing only 1-2 microseconds with MVAPICH and wondering why OpenMPI either isn't performing as well or doesn't play well with how bounce is measuring latency (by timing 0 byte messages). I've tried to play with a few parameters with no success. Here's how the build is configured:
./configure --prefix=/part0/apps/MPI/intel/openmpi-1.4.1 \
--disable-dlopen --with-wrapper-ldflags="-shared-intel" \
--with-openib --enable-openib-connectx-xrc --enable-openib-rdmacm \
CC=icc CXX=icpc F77=ifort FC=ifort \
CFLAGS="$myflags" FFLAGS="$myflags" CXXFLAGS="$myflags" FCFLAGS="$myflags" \