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Subject: Re: [OMPI users] Cannot get OpenMPI 1.3.3 to work with Torque 2.4.2
From: chih lee (chihlee0214_at_[hidden])
Date: 2010-01-05 12:22:10


This problem has been solved and yes I accidentally deleted the #'s. Thank
you so much!

Steve

Date: Tue, 5 Jan 2010 06:29:50 -0600
> From: pat.o'bryant_at_[hidden] <pat.o%27bryant_at_[hidden]>
> Subject: Re: [OMPI users] Cannot get OpenMPI 1.3.3 to work with Torque
> 2.4.2
> To: Open MPI Users <users_at_[hidden]>
> Message-ID:
> <
> OF72CB36BF.5608F73D-ON862576A2.00446C40-862576A2.0044AC31_at_[hidden]>
>
> Content-Type: text/plain; charset=US-ASCII
>
>
>
> I believe the problem is a missing "#" character. So, the correct way to
> specify aTorque/PBS parameter is:
>
> #PBS -N Test
>
> Since you specified "PBS -N Test" you are getting the message "PBS" not
> found. "PBS" is being interpreted as a command and not a parameter.
>
>
> J.W. (Pat) O'Bryant,Jr.
> Business Line Infrastructure
> Technical Systems, HPC
>
>
>
>
> Ralph Castain
> <rhc_at_open-mpi.
> org> To
> Sent by: Open MPI Users <users_at_[hidden]>
> users-bounces@ cc
> open-mpi.org
> Subject
> Re: [OMPI users] Cannot get OpenMPI
> 01/04/10 11:50 1.3.3 to work with Torque 2.4.2
> PM
>
>
> Please respond
> to
> Open MPI Users
> <users_at_open-mp
> i.org>
>
>
>
>
>
>
>
>
> I suggest you contact the Torque user list about this - it is a Torque
> configuration issue, not something to do with OMPI.
>
> On Jan 3, 2010, at 10:49 PM, chih lee wrote:
>
> Hello,
>
> I followed the instructions on the FAQ page to configure and compile
> openmpi so that it should work with Torque.
> ./configure --with-tm=/usr/local --prefix=/usr/local
> The option --disable-server was used to configure torque on the
> compute nodes.
> I got openmpi compiled without any error message on the head and
> compute nodes.
>
> I can use
> $ mpirun -np 2 --host node1,node2 a.out
> to run parallel programs without any problem.
>
> However, when I submit the following script with qsub
>
> ____________________________________________________________________
> #!/bin/sh
> #
> PBS -N Test
> PBS -o /home2/user2/test.sh.o
> PBS -l nodes=8
> mpirun /home2/user2/a.out # a.out simply prints out # of procs and
> its ID
> ____________________________________________________________________
>
> I got the following output and error messages.
>
> Output:
> N. of procs = 1, proc ID = 0
>
> Error messages:
> /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 3: PBS: not
> found
> /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 4: PBS: not
> found
> /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 5: PBS: not
> found
> /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 6: PBS: not
> found
> /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 7: PBS: not
> found
> /var/spool/torque/mom_priv/jobs/198.my_head_node.SC: 8: PBS: not
> found
>
> I'm new to OpenMPI and Torque. I really appreciate it if you can give
> me some insights. Thanks!
>
> Best,
> Steve
>
>
>
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