Open MPI logo

Open MPI User's Mailing List Archives

  |   Home   |   Support   |   FAQ   |   all Open MPI User's mailing list

Subject: Re: [OMPI users] Runtime error while running mpirun
From: Shiqing Fan (fan_at_[hidden])
Date: 2009-11-02 10:11:57


Hi Basant,

Yes, rename the output file name should solve the problem. I'll try to
fix it ASAP.

Could you send me again the log files, but maybe off list, I can't open
it, it got corrupted somehow. And please also send me the output of
ompi_info, and
ompi-src/contrib/platform/win32/CMakeModules/check_mca_subdirs.cmake .
These would be very helpful for me to look into the problem. Thanks a lot.

Regards,
Shiqing

basant.lakhotiya_at_[hidden] wrote:
> Hi Shiqing,
>
>
> Thanks for quick response. I checked my output directory there are many mca dlls with "lib" prefix.
>
> And the output file name is "libmca_paffinity_windowsd.dll" in linker->general. Should I change it to mca_paffinity_windowsd.dll.
>
> Also I am attaching CMakeOutput.log and CMakeError.log.
>
> Thanks,
> Basant
>
>
> ________________________________
>
> From: Shiqing Fan [mailto:fan_at_[hidden]]
> Sent: Mon 11/2/2009 7:55 PM
> To: Basant Lakhotiya (WT01 - Computing and Storage IPG)
> Cc: users_at_[hidden]
> Subject: Re: [OMPI users] Runtime error while running mpirun
>
>
>
>
> Hi Basant,
>
>
> Could you please also check in your Open MPI solutions, that do you have
> the mca_paffinity_windows project? and in the property of this project,
> go to linker->General, in "Output File" field, you will see the file
> name of this DLL, is the name "libmca_paffinity_windows.dll" or
> "mca_paffinity_windows.dll".
>
> I just want to make sure the generated solution is correct. If it's
> correct, you can just rebuilt this single project, and then check if the
> correct dll is generated. If the project property is not correct, then I
> think I need to take a look your CMake cache file which you will find in
> the root directory of the solution. Thanks.
>
>
> Regards,
> Shiqing
>
>
>
> basant.lakhotiya_at_[hidden] wrote:
>
>> Hi Shiqing,
>>
>> Sorry for misunderstanding. I checked its not creating mca_paffinity_windows.dll and mca_paffinity_windowsd.dll instead that files are libmca_paffinity_windows.dll and libmca_paffinity_windowsd.dll. Only .lib files are there for mca_paffinity_windows and mca_paffinity_windowsd.
>>
>>
>> The corresponding new errors are:
>>
>>
>> [8puq2akbo:04880] mca: base: component_find: unable to open C:/Sou
>> rce/installed/lib/openmpi/debug/mca_paffinity_windows: can't open the module (ig
>> nored)
>> [8puq2akbo:04880] mca: base: component_find: unable to open C:/Sou
>> rce/installed/lib/openmpi/debug/mca_paffinity_windowsd: can't open the module (i
>> gnored)
>> --------------------------------------------------------------------------
>> It looks like opal_init failed for some reason; your parallel process is
>> likely to abort. There are many reasons that a parallel process can
>> fail during opal_init; some of which are due to configuration or
>> environment problems. This failure appears to be an internal failure;
>> here's some additional information (which may only be relevant to an
>> Open MPI developer):
>> opal_paffinity_base_select failed
>> --> Returned value -13 instead of OPAL_SUCCESS
>> --------------------------------------------------------------------------
>> [8puq2akbo:04880] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file ..
>> \..\Source\orte\runtime\orte_init.c at line 79
>> [8puq2akbo:04880] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file ..
>> \..\..\..\Source\orte\tools\orterun\orterun.c at line 570
>>
>>
>> Regards,
>> Basant
>>
>> ________________________________
>>
>> From: Shiqing Fan [mailto:fan_at_[hidden]]
>> Sent: Mon 11/2/2009 6:13 PM
>> To: Open MPI Users
>> Cc: Basant Lakhotiya (WT01 - Computing and Storage IPG)
>> Subject: Re: [OMPI users] Runtime error while running mpirun
>>
>>
>>
>>
>> Hi Basant,
>>
>>
>> The mca_paffinity_windowsd.dll is the debug version of
>> mca_paffinity_windows.dll, but orterun.exe should know which one it can
>> use when you build it.
>>
>> Because you were building Open MPI with libtool support, probably the
>> problem could be that libtool is not loaded correctly. Could you check
>> that libtool bin directory is in the PATH environment variable? If Open
>> MPI can't find correct libtool library to call, it can't load any mca
>> libraries for sure.
>>
>> Hope this will be helpful for you.
>>
>>
>> Best Regards,
>> Shiqing
>>
>>
>> basant.lakhotiya_at_[hidden] wrote:
>>
>>
>>> Hi Terry,
>>>
>>> I complied OMPI again, Its creating mca_paffinity_windows and
>>> mca_paffinity_windowsd.dll.
>>> And also I have checked the dependency of both dll through "VS2005
>>> Depends". Its not showing any missing dependency for these dlls.
>>>
>>> While running orterun.exe its giving the same error.
>>>
>>> Thanks,
>>> Basant
>>>
>>> ------------------------------------------------------------------------
>>> *From:* Basant [mailto:basant.lakhotiya_at_[hidden]]
>>> *Sent:* Mon 11/2/2009 12:14 PM
>>> *To:* 'Open MPI Users'
>>> *Subject:* RE: [OMPI users] Runtime error while running mpirun
>>>
>>> Hi Terry,
>>>
>>> Its not creating mca_paffinity_windows.dll but there is a file
>>> mca_paffinity_windowsd.dll.
>>> Can you have any idea why it is not creating mca_paffinity_windows's dll.
>>>
>>> Thanks,
>>> Basant
>>>
>>> -----Original Message-----
>>> From: users-bounces_at_[hidden] [mailto:users-bounces_at_[hidden]] On
>>> Behalf Of Terry Dontje
>>> Sent: Friday, October 30, 2009 11:05 PM
>>> To: users_at_[hidden]
>>> Subject: Re: [OMPI users] Runtime error while running mpirun
>>>
>>> Hi Basant,
>>>
>>> I am not familiar with Windows builds of Open MPI. However, can you
>>> see if
>>> you Open MPI build actually created a mca_paffinity_window's dll? I could
>>> imagine the issue might be that the dll is not finding a needed
>>> dependency.
>>> Under Windows is there a command similar to Unix's ldd command you can run
>>> on the dll (if it exists)?
>>>
>>> --td
>>>
>>>
>>>> *Subject:* [OMPI users] Runtime error while running mpirun
>>>> *From:* /basant.lakhotiya_at_[hidden]/
>>>> <mailto:basant.lakhotiya_at_%5Bhidden%5D?Subject=Re:%20%5BOMPI%20users
>>>> %5D%20Runtime%20error%20while%20running%20mpirun>
>>>> *Date:* 2009-10-30 10:09:20
>>>>
>>>> Hi All,
>>>>
>>>> I compiled OpenMPI in windows server 2003 through Cygwin and also
>>>> through CMake and Visual Studio. In both the method I successfully
>>>> complied in cygwin I configured with following command
>>>>
>>>> ./configure
>>>> --enable-mca-no-build=timer-windows,memory_mallopt,maffinity,paffinity
>>>>
>>>> without these flags I was getting error.
>>>>
>>>> I got same error while running mpirun.exe/orterun.exe.
>>>> Can anyone help me to rectify these errors.
>>>>
>>>>
>>>> C:\openmpi_sln\debug>orterun.exe -np 2 ipconfig [8puq2akbo:07476] mca:
>>>> base: component_find: "mca_paffinity_windows" does not appear to be a
>>>> valid paffinity MCA dynamic component (ignored):
>>>> The specifie
>>>> d module could not be found.
>>>> ----------------------------------------------------------------------
>>>> ----
>>>>
>>>> It looks like opal_init failed for some reason; your parallel process
>>>> is likely to abort. There are many reasons that a parallel process can
>>>> fail during opal_init; some of which are due to configuration or
>>>> environment problems. This failure appears to be an internal failure;
>>>> here's some additional information (which may only be relevant to an
>>>> Open MPI developer):
>>>>
>>>> opal_paffinity_base_select failed
>>>> --> Returned value -13 instead of OPAL_SUCCESS
>>>> ----------------------------------------------------------------------
>>>> ----
>>>>
>>>> [8puq2akbo:07476] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in
>>>> file ..
>>>> \..\Linpack\Source\orte\runtime\orte_init.c at line 79
>>>> [8puq2akbo:07476] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in
>>>> file ..
>>>> \..\..\..\Linpack\Source\orte\tools\orterun\orterun.c at line 570
>>>>
>>>>
>>>>
>>>> Thanks,
>>>> Basant
>>>>
>>>>
>>> _______________________________________________
>>> users mailing list
>>> users_at_[hidden]
>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>
>>> * Please do not print this email unless it is absolutely necessary. *
>>>
>>> The information contained in this electronic message and any
>>> attachments to this message are intended for the exclusive use of the
>>> addressee(s) and may contain proprietary, confidential or privileged
>>> information. If you are not the intended recipient, you should not
>>> disseminate, distribute or copy this e-mail. Please notify the sender
>>> immediately and destroy all copies of this message and any attachments.
>>>
>>> WARNING: Computer viruses can be transmitted via email. The recipient
>>> should check this email and any attachments for the presence of
>>> viruses. The company accepts no liability for any damage caused by any
>>> virus transmitted by this email.
>>>
>>> www.wipro.com
>>>
>>> ------------------------------------------------------------------------
>>>
>>> _______________________________________________
>>> users mailing list
>>> users_at_[hidden]
>>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>>
>>>
>> --
>> --------------------------------------------------------------
>> Shiqing Fan http://www.hlrs.de/people/fan
>> High Performance Computing Tel.: +49 711 685 87234
>> Center Stuttgart (HLRS) Fax.: +49 711 685 65832
>> Address:Allmandring 30 email: fan_at_[hidden]
>> 70569 Stuttgart
>>
>>
>>
>>
>> Please do not print this email unless it is absolutely necessary.
>>
>> The information contained in this electronic message and any attachments to this message are intended for the exclusive use of the addressee(s) and may contain proprietary, confidential or privileged information. If you are not the intended recipient, you should not disseminate, distribute or copy this e-mail. Please notify the sender immediately and destroy all copies of this message and any attachments.
>>
>> WARNING: Computer viruses can be transmitted via email. The recipient should check this email and any attachments for the presence of viruses. The company accepts no liability for any damage caused by any virus transmitted by this email.
>>
>> www.wipro.com
>>
>>
>
>
> --
> --------------------------------------------------------------
> Shiqing Fan http://www.hlrs.de/people/fan
> High Performance Computing Tel.: +49 711 685 87234
> Center Stuttgart (HLRS) Fax.: +49 711 685 65832
> Address:Allmandring 30 email: fan_at_[hidden]
> 70569 Stuttgart
>
>
>
>
> Please do not print this email unless it is absolutely necessary.
>
> The information contained in this electronic message and any attachments to this message are intended for the exclusive use of the addressee(s) and may contain proprietary, confidential or privileged information. If you are not the intended recipient, you should not disseminate, distribute or copy this e-mail. Please notify the sender immediately and destroy all copies of this message and any attachments.
>
> WARNING: Computer viruses can be transmitted via email. The recipient should check this email and any attachments for the presence of viruses. The company accepts no liability for any damage caused by any virus transmitted by this email.
>
> www.wipro.com
>

-- 
--------------------------------------------------------------
Shiqing Fan                          http://www.hlrs.de/people/fan
High Performance Computing           Tel.: +49 711 685 87234
  Center Stuttgart (HLRS)            Fax.: +49 711 685 65832
Address:Allmandring 30               email: fan_at_[hidden]    
70569 Stuttgart