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Subject: Re: [OMPI users] mpirun failure
From: Ralph Castain (rhc_at_[hidden])
Date: 2009-10-18 00:04:22


Looks to me like you may be picking up an earlier version when you
launch. At least, when I look at the error message, it says that it
came from a file in the openmpi-1.3 directory tree. Yet you say you
installed 1.3.2 and 1.3.3.

Any chance your ld_library_path is pointing at the older version?

On Oct 17, 2009, at 11:29 AM, Oswald Benedikt wrote:

> Dear open-mpi users / developers, maybe this problem has been
> treated before but at least I can not find it:
>
> I have tried both open mpi 1.3.2 and 1.3.3 on Mac OS X (10.5.8).
> Compilation and installation of openmpi
> works well, also compilation and linking of users applications.
> However, when I want to start an application
> with mpirun, it crashes, both for open mpi 1.3.3. and 1.3.2 as
> follows:
>
>
>
> benedikt-oswalds-macbook-pro:mieScatteringDispersive benediktoswald$
> mpirun -np 2 ../../../hades3d/hades3d --option-
> file=mieScatteringDispersive.job
> [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/ess/env/ess_env_module.c at line 235
> [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/ess/env/ess_env_module.c at line 261
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/
> orte/mca/ess/base/ess_base_nidmap.c at line 153
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/ess/env/ess_env_module.c at line 235
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/
> orte/mca/ess/base/ess_base_nidmap.c at line 153
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/ess/env/ess_env_module.c at line 261
> --------------------------------------------------------------------------
> It looks like MPI_INIT failed for some reason; your parallel process
> is
> likely to abort. There are many reasons that a parallel process can
> fail during MPI_INIT; some of which are due to configuration or
> environment
> problems. This failure appears to be an internal failure; here's some
> additional information (which may only be relevant to an Open MPI
> developer):
>
> orte_grpcomm_modex failed
> --> Returned "Not found" (-13) instead of "Success" (0)
> --------------------------------------------------------------------------
> *** An error occurred in MPI_Init
> *** before MPI was initialized
> *** MPI_ERRORS_ARE_FATAL (your MPI job will now abort)
> [benedikt-oswalds-macbook-pro.local:50794] Abort before MPI_INIT
> completed successfully; not able to guarantee that all other
> processes were killed!
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/ess/env/ess_env_module.c at line 297
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/grpcomm/bad/grpcomm_bad_module.c at line 559
> --------------------------------------------------------------------------
> mpirun has exited due to process rank 1 with PID 50794 on
> node benedikt-oswalds-macbook-pro.local exiting without calling
> "finalize". This may
> have caused other processes in the application to be
> terminated by signals sent by mpirun (as reported here).
> --------------------------------------------------------------------------
>
>
> Can anyone comment on this ? Is this a basic installation or path
> problem ?
>
> openmpi 1.3 does not show this problem.
>
> Thanks, Benedikt
>
>
>
>
> ------------------------------------------------------------------------------------------------------------------
> Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch,
> Computational Accelerator Scientist
> Paul Scherrer Institute (PSI), CH-5232 Villigen, Suisse, benedikt.oswald_at_[hidden]
> , +41(0)56 310 32 12
> "Passion is required for any great work, and for the Revolution
> passion and audacity are required in big doses.",
> Ernesto 'Che' Guevara, Letter to his parents.
> http://maxwell.psi.ch/amaswiki/index.php/User:BenediktOswald
> ------------------------------------------------------------------------------------------------------------------
>
>
>
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