Open MPI logo

Open MPI User's Mailing List Archives

  |   Home   |   Support   |   FAQ   |   all Open MPI User's mailing list

Subject: [OMPI users] openmpi with xgrid
From: Alan (alanwilter_at_[hidden])
Date: 2009-08-14 09:21:30


Hi there,
I saw that http://www.open-mpi.org/community/lists/users/2007/08/3900.php.

I use fink, and so I changed the openmpi.info file in order to get openmpi
with xgrid support.

As you can see:
amadeus[2081]:~/Downloads% /sw/bin/ompi_info
                 Package: Open MPI root_at_amadeus.local Distribution
                Open MPI: 1.3.3
   Open MPI SVN revision: r21666
   Open MPI release date: Jul 14, 2009
                Open RTE: 1.3.3
   Open RTE SVN revision: r21666
   Open RTE release date: Jul 14, 2009
                    OPAL: 1.3.3
       OPAL SVN revision: r21666
       OPAL release date: Jul 14, 2009
            Ident string: 1.3.3
                  Prefix: /sw
 Configured architecture: x86_64-apple-darwin9
          Configure host: amadeus.local
           Configured by: root
           Configured on: Fri Aug 14 12:58:12 BST 2009
          Configure host: amadeus.local
                Built by:
                Built on: Fri Aug 14 13:07:46 BST 2009
              Built host: amadeus.local
              C bindings: yes
            C++ bindings: yes
      Fortran77 bindings: yes (single underscore)
      Fortran90 bindings: yes
 Fortran90 bindings size: small
              C compiler: gcc
     C compiler absolute: /sw/var/lib/fink/path-prefix-10.6/gcc
            C++ compiler: g++
   C++ compiler absolute: /sw/var/lib/fink/path-prefix-10.6/g++
      Fortran77 compiler: gfortran
  Fortran77 compiler abs: /sw/bin/gfortran
      Fortran90 compiler: gfortran
  Fortran90 compiler abs: /sw/bin/gfortran
             C profiling: yes
           C++ profiling: yes
     Fortran77 profiling: yes
     Fortran90 profiling: yes
          C++ exceptions: no
          Thread support: posix (mpi: no, progress: no)
           Sparse Groups: no
  Internal debug support: no
     MPI parameter check: runtime
Memory profiling support: no
Memory debugging support: no
         libltdl support: yes
   Heterogeneous support: no
 mpirun default --prefix: no
         MPI I/O support: yes
       MPI_WTIME support: gettimeofday
Symbol visibility support: yes
   FT Checkpoint support: no (checkpoint thread: no)
           MCA backtrace: execinfo (MCA v2.0, API v2.0, Component v1.3.3)
           MCA paffinity: darwin (MCA v2.0, API v2.0, Component v1.3.3)
               MCA carto: auto_detect (MCA v2.0, API v2.0, Component v1.3.3)
               MCA carto: file (MCA v2.0, API v2.0, Component v1.3.3)
           MCA maffinity: first_use (MCA v2.0, API v2.0, Component v1.3.3)
               MCA timer: darwin (MCA v2.0, API v2.0, Component v1.3.3)
         MCA installdirs: env (MCA v2.0, API v2.0, Component v1.3.3)
         MCA installdirs: config (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA dpm: orte (MCA v2.0, API v2.0, Component v1.3.3)
              MCA pubsub: orte (MCA v2.0, API v2.0, Component v1.3.3)
           MCA allocator: basic (MCA v2.0, API v2.0, Component v1.3.3)
           MCA allocator: bucket (MCA v2.0, API v2.0, Component v1.3.3)
                MCA coll: basic (MCA v2.0, API v2.0, Component v1.3.3)
                MCA coll: hierarch (MCA v2.0, API v2.0, Component v1.3.3)
                MCA coll: inter (MCA v2.0, API v2.0, Component v1.3.3)
                MCA coll: self (MCA v2.0, API v2.0, Component v1.3.3)
                MCA coll: sm (MCA v2.0, API v2.0, Component v1.3.3)
                MCA coll: sync (MCA v2.0, API v2.0, Component v1.3.3)
                MCA coll: tuned (MCA v2.0, API v2.0, Component v1.3.3)
                  MCA io: romio (MCA v2.0, API v2.0, Component v1.3.3)
               MCA mpool: fake (MCA v2.0, API v2.0, Component v1.3.3)
               MCA mpool: rdma (MCA v2.0, API v2.0, Component v1.3.3)
               MCA mpool: sm (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA pml: cm (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA pml: csum (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA pml: ob1 (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA pml: v (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA bml: r2 (MCA v2.0, API v2.0, Component v1.3.3)
              MCA rcache: vma (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA btl: self (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA btl: sm (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA btl: tcp (MCA v2.0, API v2.0, Component v1.3.3)
                MCA topo: unity (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA osc: pt2pt (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA osc: rdma (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA iof: hnp (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA iof: orted (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA iof: tool (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA oob: tcp (MCA v2.0, API v2.0, Component v1.3.3)
                MCA odls: default (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA ras: slurm (MCA v2.0, API v2.0, Component v1.3.3)
               MCA rmaps: rank_file (MCA v2.0, API v2.0, Component v1.3.3)
               MCA rmaps: round_robin (MCA v2.0, API v2.0, Component v1.3.3)
               MCA rmaps: seq (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA rml: oob (MCA v2.0, API v2.0, Component v1.3.3)
              MCA routed: binomial (MCA v2.0, API v2.0, Component v1.3.3)
              MCA routed: direct (MCA v2.0, API v2.0, Component v1.3.3)
              MCA routed: linear (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA plm: rsh (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA plm: slurm (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA plm: xgrid (MCA v2.0, API v2.0, Component v1.3.3)
               MCA filem: rsh (MCA v2.0, API v2.0, Component v1.3.3)
              MCA errmgr: default (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA ess: env (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA ess: hnp (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA ess: singleton (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA ess: slurm (MCA v2.0, API v2.0, Component v1.3.3)
                 MCA ess: tool (MCA v2.0, API v2.0, Component v1.3.3)
             MCA grpcomm: bad (MCA v2.0, API v2.0, Component v1.3.3)
             MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.3.3)

All seemed fine and I also have xgrid controller and agent running in my
laptop, and then when I tried:

/sw/bin/om-mpirun -c 2 mpiapp # hello world example for mpi
[amadeus.local:40293] [[804,0],0] ORTE_ERROR_LOG: Unknown error: 1 in file
src/plm_xgrid_module.m at line 119
[amadeus.local:40293] [[804,0],0] ORTE_ERROR_LOG: Unknown error: 1 in file
src/plm_xgrid_module.m at line 153
--------------------------------------------------------------------------
om-mpirun was unable to start the specified application as it encountered an
error.
More information may be available above.
--------------------------------------------------------------------------
2009-08-14 14:16:19.715 om-mpirun[40293:10b] *** Terminating app due to
uncaught exception 'NSInvalidArgumentException', reason: '***
-[NSKVONotifying_XGConnection<0x1001164b0> finalize]: called when collecting
not enabled'
2009-08-14 14:16:19.716 om-mpirun[40293:10b] Stack: (
    140735390096156,
    140735366109391,
    140735390122388,
    4295943988,
    4295939168,
    4295171139,
    4295883300,
    4295025321,
    4294973498,
    4295401605,
    4295345774,
    4295056598,
    4295116412,
    4295119970,
    4295401605,
    4294972881,
    4295401605,
    4295345774,
    4295056598,
    4295172615,
    4295938185,
    4294971936,
    4294969401,
    4294969340
)
terminate called after throwing an instance of 'NSException'
[amadeus:40293] *** Process received signal ***
[amadeus:40293] Signal: Abort trap (6)
[amadeus:40293] Signal code: (0)
[amadeus:40293] [ 0] 2 libSystem.B.dylib
0x00000000831443fa _sigtramp + 26
[amadeus:40293] [ 1] 3 ???
0x000000005fbfb1e8 0x0 + 1606398440
[amadeus:40293] [ 2] 4 libstdc++.6.dylib
0x00000000827f2085 _ZN9__gnu_cxx27__verbose_terminate_handlerEv + 377
[amadeus:40293] [ 3] 5 libobjc.A.dylib
0x0000000081811adf objc_end_catch + 280
[amadeus:40293] [ 4] 6 libstdc++.6.dylib
0x00000000827f0425 __gxx_personality_v0 + 1259
[amadeus:40293] [ 5] 7 libstdc++.6.dylib
0x00000000827f045b _ZSt9terminatev + 19
[amadeus:40293] [ 6] 8 libstdc++.6.dylib
0x00000000827f054c __cxa_rethrow + 0
[amadeus:40293] [ 7] 9 libobjc.A.dylib
0x0000000081811966 objc_exception_rethrow + 0
[amadeus:40293] [ 8] 10 CoreFoundation
 0x0000000082ef8194 _CF_forwarding_prep_0 + 5700
[amadeus:40293] [ 9] 11 mca_plm_xgrid.so
 0x00000000000ee734 orte_plm_xgrid_finalize + 4884
[amadeus:40293] [10] 12 mca_plm_xgrid.so
 0x00000000000ed460 orte_plm_xgrid_finalize + 64
[amadeus:40293] [11] 13 libopen-rte.0.dylib
0x0000000000031c43 orte_plm_base_close + 195
[amadeus:40293] [12] 14 mca_ess_hnp.so
 0x00000000000dfa24 0x0 + 916004
[amadeus:40293] [13] 15 libopen-rte.0.dylib
0x000000000000e2a9 orte_finalize + 89
[amadeus:40293] [14] 16 om-mpirun
0x000000000000183a start + 4210
[amadeus:40293] [15] 17 libopen-pal.0.dylib
0x000000000006a085 opal_event_add_i + 1781
[amadeus:40293] [16] 18 libopen-pal.0.dylib
0x000000000005c66e opal_progress + 142
[amadeus:40293] [17] 19 libopen-rte.0.dylib
0x0000000000015cd6 orte_trigger_event + 70
[amadeus:40293] [18] 20 libopen-rte.0.dylib
0x000000000002467c orte_daemon_recv + 4332
[amadeus:40293] [19] 21 libopen-rte.0.dylib
0x0000000000025462 orte_daemon_cmd_processor + 722
[amadeus:40293] [20] 22 libopen-pal.0.dylib
0x000000000006a085 opal_event_add_i + 1781
[amadeus:40293] [21] 23 om-mpirun
0x00000000000015d1 start + 3593
[amadeus:40293] [22] 24 libopen-pal.0.dylib
0x000000000006a085 opal_event_add_i + 1781
[amadeus:40293] [23] 25 libopen-pal.0.dylib
0x000000000005c66e opal_progress + 142
[amadeus:40293] [24] 26 libopen-rte.0.dylib
0x0000000000015cd6 orte_trigger_event + 70
[amadeus:40293] [25] 27 libopen-rte.0.dylib
0x0000000000032207 orte_plm_base_launch_failed + 135
[amadeus:40293] [26] 28 mca_plm_xgrid.so
 0x00000000000ed089 orte_plm_xgrid_spawn + 89
[amadeus:40293] [27] 29 om-mpirun
0x0000000000001220 start + 2648
[amadeus:40293] [28] 30 om-mpirun
0x0000000000000839 start + 113
[amadeus:40293] [29] 31 om-mpirun
0x00000000000007fc start + 52
[amadeus:40293] *** End of error message ***
[1] 40293 abort /sw/bin/om-mpirun -c 2 mpiapp

Is there anyone using openmpi with xgrid successfully keen to share his/her
experience? I am not new to xgrid or mpi, but to both integrated I must say
that I am in uncharted waters.

Any help would be very appreciated.

Many thanks in advance,
Alan

-- 
Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
Department of Biochemistry, University of Cambridge.
80 Tennis Court Road, Cambridge CB2 1GA, UK.
>>http://www.bio.cam.ac.uk/~awd28<<