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Subject: Re: [OMPI users] bulding rpm
From: rahmani (m_rahmani56_at_[hidden])
Date: 2009-07-09 10:22:38


----- Original Message -----
From: "Jeff Squyres" <jsquyres_at_[hidden]>
To: "Open MPI Users" <users_at_[hidden]>
Sent: Thursday, July 9, 2009 7:34:49 AM (GMT-0500) America/New_York
Subject: Re: [OMPI users] bulding rpm

On Jul 7, 2009, at 1:32 AM, rahmani wrote:

> it create openmpi-1.3.2-1.x86_64.rpm with no error, but when I
> install it with rpm -ivh I see:
> error: Failed dependencies:
> libifcoremt.so.5()(64bit) is needed by openmpi-1.3.2-1.x86_64
> libifport.so.5()(64bit) is needed by openmpi-1.3.2-1.x86_64
> libimf.so()(64bit) is needed by openmpi-1.3.2-1.x86_64
> libintlc.so.5()(64bit) is needed by openmpi-1.3.2-1.x86_64
> libiomp5.so()(64bit) is needed by openmpi-1.3.2-1.x86_64
> libsvml.so()(64bit) is needed by openmpi-1.3.2-1.x86_64
> libtorque.so.2()(64bit) is needed by openmpi-1.3.2-1.x86_64
> but all above library are in my computer
>

Several of these look like they are the intel compiler libraries. I
think that libtorque is the Torque support library (resource manager)
-- which seems weird because you explicitly built with SGE support.

Where are these library files located -- can they all be found via
your LD_LIBRARY_PATH?

> I use rpm -ivh --nodeps and it install completely, but when I use
> mpif90 and mpirun I see:
> $ /usr/local/openmpi/intel/1.3.2/bin/mpif90
> gfortran: no input files (I compile with ifort!!!!)
>

What does "/usr/local/openmpi/intel/1.3.2/bin/mpif90 --showme" show?

Does your LD_LIBRARY_PATH include a directory where another Open MPI
is installed? E.g., could running mpif90 be picking up the "wrong"
MPI installation? (and therefore picking up the other OMPI's compiler
preference -- gfortran in this case)

> $ /usr/local/openmpi/intel/1.3.2/bin/mpirun
> usr/local/openmpi/intel/1.3.2/bin/mpirun: symbol lookup error: /usr/
> local/openmpi/intel/1.3.2/bin/mpirun: undefined symbol: orted_cmd_line
>

mpirun didn't complain that it couldn't find its supporting .so
libraries, so I'm guessing LD_LIBRARY_PATH is pointing to *some* OMPI
libraries, but the fact that it can't find a symbol that it wants
leads me to believe that it's pointing to the "wrong" OMPI install.
What does "ldd /usr/local/openmpi/intel/1.3.2/bin/mpirun" show?

-- 
Jeff Squyres
Cisco Systems
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Dear Jeff Squyres
Thanks for your reply
yes, they are intel library and all are in LD_LIBRARY_PATH
/usr/local/openmpi/intel/1.3.2/bin/mpif90 --showme
gfortran -I/usr/local/include -pthread -I/usr/local/lib -L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl
ldd /usr/local/openmpi/intel/1.3.2/bin/mpirun
        linux-vdso.so.1 =>  (0x00007fff555fd000)
        libopen-rte.so.0 => /usr/local/lib/libopen-rte.so.0 (0x00007fa64d154000)
        libopen-pal.so.0 => /usr/local/lib/libopen-pal.so.0 (0x00007fa64cef2000)
        libdl.so.2 => /lib64/libdl.so.2 (0x00007fa64ccee000)
        libnsl.so.1 => /lib64/libnsl.so.1 (0x00007fa64cad6000)
        libutil.so.1 => /lib64/libutil.so.1 (0x00007fa64c8d3000)
        libm.so.6 => /lib64/libm.so.6 (0x00007fa64c67d000)
        libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007fa64c466000)
        libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fa64c24a000)
        libc.so.6 => /lib64/libc.so.6 (0x00007fa64bef1000)
        /lib64/ld-linux-x86-64.so.2 (0x00007fa64d3b2000)
I had another openmpi in my computer. I configure openmpi 1.3 with gnu compiler and --prefix=/usr/local
I can not use both of them?
how I can solve this problem?