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Subject: [OMPI users] Compile problems with 1.3.2
From: Jim Kusznir (jkusznir_at_[hidden])
Date: 2009-06-29 16:31:14


Hi all:

I'm trying to build and install openmpi-1.3.2 for my cluster using
enviornment-modules. My build failed, but on something that I have no
idea how to debug. Here's the relevent output:

Making all in vtlib
make[5]: Entering directory
`/usr/src/redhat/BUILD/openmpi-1.3.2/ompi/contrib/vt/vt/vtlib'
gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
-I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
-DBINDIR=\"/opt/openmpi-gcc/1.3.2/bin\"
-DDATADIR=\"/opt/openmpi-gcc/1.3.2/share\" -DRFG -DVT_BFD -DVT_MEMHOOK
-DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT
vt_comp_gnu.o -MD -MP -MF .deps/vt_comp_gnu.Tpo -c -o vt_comp_gnu.o
vt_comp_gnu.c
mv -f .deps/vt_comp_gnu.Tpo .deps/vt_comp_gnu.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
-I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
-DBINDIR=\"/opt/openmpi-gcc/1.3.2/bin\"
-DDATADIR=\"/opt/openmpi-gcc/1.3.2/share\" -DRFG -DVT_BFD -DVT_MEMHOOK
-DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT
vt_memhook.o -MD -MP -MF .deps/vt_memhook.Tpo -c -o vt_memhook.o
vt_memhook.c
mv -f .deps/vt_memhook.Tpo .deps/vt_memhook.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
-I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
-DBINDIR=\"/opt/openmpi-gcc/1.3.2/bin\"
-DDATADIR=\"/opt/openmpi-gcc/1.3.2/share\" -DRFG -DVT_BFD -DVT_MEMHOOK
-DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT
vt_memreg.o -MD -MP -MF .deps/vt_memreg.Tpo -c -o vt_memreg.o
vt_memreg.c
mv -f .deps/vt_memreg.Tpo .deps/vt_memreg.Po
gcc -DHAVE_CONFIG_H -I. -I.. -I../tools/opari/lib
-I../extlib/otf/otflib -I../extlib/otf/otflib -D_GNU_SOURCE
-DBINDIR=\"/opt/openmpi-gcc/1.3.2/bin\"
-DDATADIR=\"/opt/openmpi-gcc/1.3.2/share\" -DRFG -DVT_BFD -DVT_MEMHOOK
-DVT_IOWRAP -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -MT
vt_iowrap.o -MD -MP -MF .deps/vt_iowrap.Tpo -c -o vt_iowrap.o
vt_iowrap.c
vt_iowrap.c:1242: error: expected declaration specifiers or '...'
before numeric constant
vt_iowrap.c:1243: error: conflicting types for '__fprintf_chk'
make[5]: *** [vt_iowrap.o] Error 1
make[5]: Leaving directory
`/usr/src/redhat/BUILD/openmpi-1.3.2/ompi/contrib/vt/vt/vtlib'

I used this as my build command:

rpmbuild -bb --define 'install_in_opt 1' --define 'install_modulefile
1' --define 'modules_rpm_name environment-modules' --define
'build_all_in_one_rpm 0' --define 'configure_options
--with-tm=/opt/torque' --define '_name openmpi-gcc' openmpi-1.3.2.spec

Suggestions?

--Jim